View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6805_low_4 (Length: 414)
Name: NF6805_low_4
Description: NF6805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6805_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 17740463 - 17740866
Alignment:
| Q |
1 |
atatagatatgatctcttatcacgacataatcacaatatgctcctaagagcagaagaaattattactacataattgtcatcttatccggagtagtgaatc |
100 |
Q |
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| T |
17740463 |
atatagatatgatctcttatcacgacataatcacaatatgctcctaagagcagaagaaattat-actacataattgtcatcttatccggagtagtgaatc |
17740561 |
T |
|
| Q |
101 |
tacaacgactgtcggatcccggagttgcttgaagacaatggaggatggcattgctacttcgagaggggctgtgttcgtgctaggactctaatgctcaagt |
200 |
Q |
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| T |
17740562 |
tacaacgactgtcggatcccgaagttgcttgaagacaatggaggatggcattgctacttcgagaggggctatgttcgtgctaggactctaatgctcaagt |
17740661 |
T |
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| Q |
201 |
aaatgagggctttaggtgagtcaagagttgaactggaatagataacatacatttcaccaagggtcgaagacctttttgttgtgcgacaagtgtgagttaa |
300 |
Q |
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| T |
17740662 |
aaatgagggctttaggtgagtcaagagttgaactggaatagataacatacatttcaccaagggtcgaagacctttttgttgtgcgacaagtgtgag---- |
17740757 |
T |
|
| Q |
301 |
ttagaaatctcgtattgcttagaaaaatggagttgaacacttaacaaattgaca-gacccataaactcaatgtcataaggattttggtaaatatgtgatg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||| | |
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| T |
17740758 |
ttagaaatctcgtattgcttagaaaaatggagttgaacacttaacaaattgacaggacccagaaactcaatgtcataaggattttggtaaacatgtgacg |
17740857 |
T |
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| Q |
400 |
tccatctca |
408 |
Q |
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|||| |||| |
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| T |
17740858 |
tccaactca |
17740866 |
T |
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