View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6805_low_5 (Length: 284)
Name: NF6805_low_5
Description: NF6805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6805_low_5 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 27499276 - 27499007
Alignment:
| Q |
7 |
ttctccacacatattccttgtgctttgttgccaaaatctttgaaggaatcaacttgcaaggttgtgtatctgtgtagagatcctaaagacatgtttgttt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27499276 |
ttctccacacatattccttgtgctttgttgccaaaatctgtgaaagaatcaacttgcaaggttgtgtatctgtgtagagatcctaaagacatgtttgttt |
27499177 |
T |
|
| Q |
107 |
cacttt-----ggcatttctcaaacaaggtaagagcacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggagtgagttct |
201 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27499176 |
cactttactttggcatttcacaaacaaggtaagagcacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggagtgagttct |
27499077 |
T |
|
| Q |
202 |
tatggacccttttgggagcatgtattaggatattggaaggaaagcttggaaaggccagaaaaggtgatgt |
271 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
27499076 |
tatggacccttttgggagcatgtattaggatattggaaggaaaacttggaaaggccagagaaggtgatgt |
27499007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 27504644 - 27504908
Alignment:
| Q |
7 |
ttctccacacatattccttgtgctttgttgccaaaatctttgaaggaatcaacttgcaaggttgtgtatctgtgtagagatcctaaagacatgtttgttt |
106 |
Q |
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||||||||||| | ||||| || ||||||||||||||||||||| || || | || ||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
27504644 |
ttctccacacacaatccttatgttttgttgccaaaatctttgaaagagtccaactgtaaggtggtgtatctttgtagagatcctaaagacacttttgttt |
27504743 |
T |
|
| Q |
107 |
cactttggcatttctcaaacaaggtaagagcacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggagtgagttcttatgg |
206 |
Q |
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||||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
27504744 |
cactttggcatttctcaaacaagctaagagaacaaagtagaggaacacttccattagaagaggcttttgagagtttttgtagaggaacaacttcttatgg |
27504843 |
T |
|
| Q |
207 |
acccttttgggagcatgtattaggatattggaaggaaagcttggaaaggccagaaaaggtgatgt |
271 |
Q |
| |
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||| |||||||| |||||||||||||| |||||||||||||||||||| || || ||||| |||| |
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| T |
27504844 |
accgttttgggatcatgtattaggatactggaaggaaagcttggaaagaccggagaaggttatgt |
27504908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 34 - 271
Target Start/End: Original strand, 27544124 - 27544361
Alignment:
| Q |
34 |
ttgccaaaatctttgaaggaatcaacttgcaaggttgtgtatctgtgtagagatcctaaagacatgtttgtttcactttggcatttctcaaacaaggtaa |
133 |
Q |
| |
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|||||||| ||| ||| || |||||||||||||| |||||||| ||||||||||| ||||||| |||||||| | ||||||||| |||||||| ||| |
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| T |
27544124 |
ttgccaaattctgcgaaagagtcaacttgcaaggtggtgtatctttgtagagatccaaaagacacttttgtttcgcactggcatttcacaaacaagctaa |
27544223 |
T |
|
| Q |
134 |
gagcacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtattaggata |
233 |
Q |
| |
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||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||| | |||||||| |||||| ||||||||||||||||| ||||| |
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| T |
27544224 |
gagcacaaagtagaggaccacttccattacaagaagctttcgagagtttttgtagaggcgcgagttcttttggaccgttttgggagcatgtattgggata |
27544323 |
T |
|
| Q |
234 |
ttggaaggaaagcttggaaaggccagaaaaggtgatgt |
271 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||| |
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| T |
27544324 |
ttggaaggaaagcttggaaaggccggagaaggtgatgt |
27544361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 271
Target Start/End: Complemental strand, 27496989 - 27496750
Alignment:
| Q |
34 |
ttgccaaaatctttgaaggaatcaacttgcaaggttgtgtatctgtgtagagatcctaaagacatgtttgtttcactttggcatttctcaaacaaggtaa |
133 |
Q |
| |
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||||||||||| |||| || |||||||||||||| ||||| |||||||||||||||||||||| ||| |||||| ||| ||||| |||||||||||| |
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| T |
27496989 |
ttgccaaaatcagtgaaagagtcaacttgcaaggtagtgtacatgtgtagagatcctaaagacatttttacttcactatggtatttcacaaacaaggtaa |
27496890 |
T |
|
| Q |
134 |
g--agcacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggagtg-agttcttatggacccttttgggagcatgtattagg |
230 |
Q |
| |
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| | || | |||| | || |||| || |||||||| | ||||||| ||||||||||| ||| | || || ||||| |||||||||||||||||||| |
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| T |
27496889 |
gacaacaaaaagtatacgaagactttcaatagaagagtcatttgagaaattttgtagaggggtgtacttgtt-tggactgttttgggagcatgtattagg |
27496791 |
T |
|
| Q |
231 |
atattggaaggaaagcttggaaaggccagaaaaggtgatgt |
271 |
Q |
| |
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|||||| | |||||| ||||||| |||||| |||||||||| |
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| T |
27496790 |
atattgaacggaaagtttggaaatgccagagaaggtgatgt |
27496750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 34 - 271
Target Start/End: Complemental strand, 11317695 - 11317458
Alignment:
| Q |
34 |
ttgccaaaatctttgaaggaatcaacttgcaaggttgtgtatctgtgtagagatcctaaagacatgtttgtttcactttggcatttctcaaacaaggtaa |
133 |
Q |
| |
|
||||| |||||| |||| || |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| | | |
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| T |
11317695 |
ttgccgaaatctgtgaaagagtcaacttgcaaggtggtgtatctatgtagagatcctaaagacacttttgtttcactttggcatttcacaaacaacctta |
11317596 |
T |
|
| Q |
134 |
gagcacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtattaggata |
233 |
Q |
| |
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||||||| ||||||||| |||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
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| T |
11317595 |
gagcacaaagtagaggaacacttccactacaagaggcttttgagaatttttgtagaggagtgagttcttttggacccttttgggagcatgtattggtata |
11317496 |
T |
|
| Q |
234 |
ttggaaggaaagcttggaaaggccagaaaaggtgatgt |
271 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| |
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| T |
11317495 |
ttggaagaaaagcttggaaaggccagagaaggtgatgt |
11317458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 254
Target Start/End: Complemental strand, 11439279 - 11439056
Alignment:
| Q |
31 |
ttgttgccaaaatctttgaaggaatcaacttgcaaggttgtgtatctgtgtagagatcctaaagacatgtttgtttcactttggcatttctcaaacaagg |
130 |
Q |
| |
|
||||||||||||||| | || || |||| ||| ||||| || ||||| ||||||||||||||||| | |||| |||||| ||||||||||||||||||| |
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| T |
11439279 |
ttgttgccaaaatctgtaaaagagtcaagttgtaaggtggtttatctttgtagagatcctaaagatacttttgcttcactatggcatttctcaaacaagg |
11439180 |
T |
|
| Q |
131 |
taagagcacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtattagg |
230 |
Q |
| |
|
||||| |||| ||||| ||| ||||||||||||||||| ||||| | | ||| ||||||||||| || | ||||||||||||||||||||||||||| |
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|
| T |
11439179 |
taagatcacaaagtagtggaacacttccattagaagagtcttttcataactttactagaggagtgactttgtttggacccttttgggagcatgtattagg |
11439080 |
T |
|
| Q |
231 |
atattggaaggaaagcttggaaag |
254 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
11439079 |
ttattggaaggaaagtttggaaag |
11439056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 34 - 271
Target Start/End: Original strand, 15460988 - 15461225
Alignment:
| Q |
34 |
ttgccaaaatctttgaaggaatcaacttgcaaggttgtgtatctgtgtagagatcctaaagacatgtttgtttcactttggcatttctcaaacaaggtaa |
133 |
Q |
| |
|
|||||||||||| | || || |||||||| ||||| |||||| ||||||||||||||||||||| |||| |||| | ||||||||| |||||||| | | |
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|
| T |
15460988 |
ttgccaaaatctataaaagattcaacttgtaaggtggtgtatttgtgtagagatcctaaagacacttttgcttcaatgtggcatttcacaaacaagatta |
15461087 |
T |
|
| Q |
134 |
gagcacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtattaggata |
233 |
Q |
| |
|
| |||| | ||||| | | |||| | |||||||| | ||||||| |||| |||||| ||||||| | ||||||||||||||| ||| |||||||||| |
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|
| T |
15461088 |
ggccacaaaatagagaaacccttcaactagaagagtcatttgagaaattttctagaggtgtgagtttgtttggacccttttgggaacatttattaggata |
15461187 |
T |
|
| Q |
234 |
ttggaaggaaagcttggaaaggccagaaaaggtgatgt |
271 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||| |
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|
| T |
15461188 |
ctggaaagaaagcttggaaaggcaagagaaggtgatgt |
15461225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 34 - 271
Target Start/End: Complemental strand, 1204 - 967
Alignment:
| Q |
34 |
ttgccaaaatctttgaaggaatcaacttgcaaggttgtgtatctgtgtagagatcctaaagacatgtttgtttcactttggcatttctcaaacaaggtaa |
133 |
Q |
| |
|
|||||||||||| | || || |||||||| ||||| |||||| ||||||||||||||||||||| |||| |||| | ||||||||| |||||||| | | |
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| T |
1204 |
ttgccaaaatctataaaagattcaacttgtaaggtggtgtatttgtgtagagatcctaaagacacttttgcttcaatgtggcatttcacaaacaagatta |
1105 |
T |
|
| Q |
134 |
gagcacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtattaggata |
233 |
Q |
| |
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| |||| | ||||| | | |||| | |||||||| | ||||||| |||| |||||| ||||||| | ||||||||||||||| ||| |||||||||| |
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| T |
1104 |
ggccacaaaatagagaaacccttcaactagaagagtcatttgagaaattttctagaggtgtgagtttgtttggacccttttgggaacatttattaggata |
1005 |
T |
|
| Q |
234 |
ttggaaggaaagcttggaaaggccagaaaaggtgatgt |
271 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
1004 |
ctggaaagaaagcttggaaaggcaagagaaggtgatgt |
967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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