View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6805_low_9 (Length: 221)
Name: NF6805_low_9
Description: NF6805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6805_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 52751092 - 52750906
Alignment:
| Q |
20 |
ccaatcgtaaaatttaagctttcaattgttcaatcttaagatccataggtctccgcaaataacctttcttctttctccttctactacttgacccattact |
119 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52751092 |
ccaatcgtataatttaagctttcaactgttcaatcttaagatccatagatctccgcaaataacctttcttctttctccttctactacttgacccattact |
52750993 |
T |
|
| Q |
120 |
gcaatttcttagatttggctggggtcgagtaaagaggaattgatagagggagagaggtcgagtggagttagaagggggtatacatct |
206 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52750992 |
gcaatttcttagatttggctggggtcgagtaaagaggaattgatagagggagagaggtcgagtggagttagaaggatgtatacatct |
52750906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 24509077 - 24508933
Alignment:
| Q |
20 |
ccaatcgtaaaatttaagctttcaattgttcaatcttaagatccataggtctccgcaaataacctttcttctttctccttctactacttgacccattact |
119 |
Q |
| |
|
||||| ||||||||| | |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24509077 |
ccaattgtaaaatttcaactttcatctgttcaatcttaagatccatagatctccgcaaataacctttcttctttctccttcaactacttgacccattact |
24508978 |
T |
|
| Q |
120 |
gcaatttcttagatttggctggggtcgagtaaagaggaattgata |
164 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
24508977 |
gcaatttcttagatttggcttgggttgagtaaagaggaattgata |
24508933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 44008213 - 44008166
Alignment:
| Q |
20 |
ccaatcgtaaaatttaagctttcaattgttcaatcttaagatccatag |
67 |
Q |
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|
||||| ||||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
44008213 |
ccaattgtaaaatttcagctttcaattgttcaatcttaagacccatag |
44008166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 13630520 - 13630705
Alignment:
| Q |
20 |
ccaatcgtaaaatttaagctttcaattgttcaatcttaagatccataggtctccgcaaataacctttcttctttctccttctactacttgacccattact |
119 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13630520 |
ccaatcgtaaaatttcagctttcaactgttcaatcttaagatccatggatctctgcaaataacctttcttctttctccttctactacttgacccattact |
13630619 |
T |
|
| Q |
120 |
gcaatttcttagatttggctggggtcgagtaaagaggaattgatagagggagagaggtcgagtggagttagaagggggtatacatc |
205 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
13630620 |
gcaatttcctagatttggctaggatcgagtaaagaggaattgatagagggagagaggtcgagtggaattagaagggtgtatacatc |
13630705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 44183429 - 44183285
Alignment:
| Q |
20 |
ccaatcgtaaaatttaagctttcaattgttcaatcttaagatccataggtctccgcaaataacctttcttctttctccttctactacttgacccattact |
119 |
Q |
| |
|
||||| ||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
44183429 |
ccaattgtaaaatttcaactttcaactgttcaatcttaagatccatagatctccgcaaataacctttcttctttctccttctactacttgacccattaat |
44183330 |
T |
|
| Q |
120 |
gcaatttcttagatttggctggggtcgagtaaagaggaattgata |
164 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
44183329 |
gcaatttcttagatttggcttgggttgagtaaagaggaactgata |
44183285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 50282537 - 50282399
Alignment:
| Q |
26 |
gtaaaatttaagctttcaattgttcaatcttaagatccataggtctccgcaaataacctttcttctttctccttctactacttgacccattactgcaatt |
125 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
50282537 |
gtaaaatttcaactttcaaatgttcaatcttaagatccatagatctccgcaaataacctttcttctttctccttctactacttgacccattaatgcaatt |
50282438 |
T |
|
| Q |
126 |
tcttagatttggctggggtcgagtaaagaggaattgata |
164 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
50282437 |
tcttagatttggcttgggttgagtaaagaggaactgata |
50282399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 9091870 - 9091962
Alignment:
| Q |
20 |
ccaatcgtaaaatttaagctttcaattgttcaatcttaagatccata----ggtctccgcaaataacctttcttctttctccttctactactt |
108 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
9091870 |
ccaattgtaaaatttcaactttcaattgttcaatcttaaaatccatacatagatctccgcaaataacatttcttctttctccttcaactactt |
9091962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 33390098 - 33389914
Alignment:
| Q |
21 |
caatcgtaaaatttaagctttcaattgttcaatcttaagatccataggtctccgcaaataacctttcttctttctccttctactacttgacccattactg |
120 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
33390098 |
caatcgtaaaatttcagctttcaactgttcaatcttaagatccatagatctccgcaaataacctttcttctctctgcttctactacttgacccattactg |
33389999 |
T |
|
| Q |
121 |
caatttcttagatttggctggggtcgagtaaagaggaattgatagagggagagaggtcgagtggagttagaagggggtatacatct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |||||||||| |
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|
| T |
33389998 |
caatttcttagatttggctggggtcgagtaaagaggaattgat-gagggagagaggttgagtggagttagaagagtgtatacatct |
33389914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 52255138 - 52254994
Alignment:
| Q |
20 |
ccaatcgtaaaatttaagctttcaattgttcaatcttaagatccataggtctccgcaaataacctttcttctttctccttctactacttgacccattact |
119 |
Q |
| |
|
||||| ||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52255138 |
ccaattgtaaaatttcaactttcaactgttcaatcttaagatccatagatctccgcaaataacctttcttctttctccttctactacttgacccattaat |
52255039 |
T |
|
| Q |
120 |
gcaatttcttagatttggctggggtcgagtaaagaggaattgata |
164 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
52255038 |
gcaatttcttagatttggcttgggttgagtaaagaggaactgata |
52254994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 902375 - 902190
Alignment:
| Q |
20 |
ccaatcgtaaaatttaagctttcaattgttcaatcttaagatccataggtctccgcaaataacctttcttctttctccttctactacttgacccattact |
119 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
902375 |
ccaatcgtaaaatttcagctttcaactgttcaatcttaagattcatagatctatgcaaataacctttcttctttctccttctactacttgaccaattacc |
902276 |
T |
|
| Q |
120 |
gcaatttcttagatttggctggggtcgagtaaagaggaattgatagagggagagaggtcgagtggagttagaagggggtatacatc |
205 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
902275 |
gcaatttcttagatttggctgggatcgagtaaagaggaattgatagagggagagtggtcgagtggaattagaagggtgtatacatc |
902190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 3094030 - 3093857
Alignment:
| Q |
20 |
ccaatcgtaaaatttaagctttcaattgttcaatcttaagatccataggtctccgcaaataacctttcttctttctccttctactacttgacccattact |
119 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3094030 |
ccaattgtaaaatttaagctttcaactcttcaatcttaagatccacagatctccacaaataacctttct-------ccttctactacttgacccattact |
3093938 |
T |
|
| Q |
120 |
gcaatttcttagatttggctggggtcgagtaaagaggaattgatagagggagagaggtcgagtggagttagaagggggtat |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3093937 |
gcaatttcttagatttggttggggtcgaataaagaggaatttatagagggagagaggtcgagtggagttagaagggtgtat |
3093857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 17236928 - 17236784
Alignment:
| Q |
20 |
ccaatcgtaaaatttaagctttcaattgttcaatcttaagatccataggtctccgcaaataacctttcttctttctccttctactacttgacccattact |
119 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
17236928 |
ccaattgtaaaatttcaactttcaattgttcaatcttaagatccatagatctccgcaaataacctttcttctttctcattctactacttgacccattaat |
17236829 |
T |
|
| Q |
120 |
gcaatttcttagatttggctggggtcgagtaaagaggaattgata |
164 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
17236828 |
gcaatttcttagatttggcttgggttgagtaaagaggaactgata |
17236784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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