View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6806_high_3 (Length: 356)
Name: NF6806_high_3
Description: NF6806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6806_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 6 - 356
Target Start/End: Original strand, 22365441 - 22365791
Alignment:
| Q |
6 |
acaaatcaagagagaagatagaatgaaaaccatttatgttgtgtggtagtgagtgcacacaaatcaaaccattttgatagatacaaattatatggtccgc |
105 |
Q |
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| T |
22365441 |
acaaatcaagagagaagatagaatgaaaatcatttatgttgtgtggtagtgagtgcacacaaatcaaaccattttgatagacacatattatatggtccgc |
22365540 |
T |
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| Q |
106 |
tctttccgtcacataccatgaaagtggttctgacaaccgcaaattccacatatacctcgggcagttctcccctccccttgagatttctgctaatcaaata |
205 |
Q |
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| T |
22365541 |
tctttccgccacataccatgaaagtggttctgacaaccgcaaattccacctatacctcgggcagttctcccctccccttgagatttctgctaatcatata |
22365640 |
T |
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| Q |
206 |
ttttatcgctcatactcatttcaattttgcatcatcagtaatcaagtttgctgaataatgacacagggcatctgcattaattttaaaatacatagaaaca |
305 |
Q |
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| T |
22365641 |
ttttatcgctcatactcatttcaatttcgcatcatcagtaatcaagtttgctgaataatgacacagggcatctgcattaattttaaaatacatagaaaca |
22365740 |
T |
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| Q |
306 |
caaacaatacttcgcatagaaaacaaaagcttacttttaaaaattcaatac |
356 |
Q |
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| T |
22365741 |
caaacaatactttgcatagaaaacaaaagcttacttttaaaaattcaatac |
22365791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 2788712 - 2788754
Alignment:
| Q |
6 |
acaaatcaagagagaagatagaatgaaaaccatttatgttgtg |
48 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2788712 |
acaaatcaagagagaagatagaatgaaaaccattcatgttgtg |
2788754 |
T |
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