View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6806_high_4 (Length: 308)
Name: NF6806_high_4
Description: NF6806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6806_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 81 - 292
Target Start/End: Original strand, 25840831 - 25841042
Alignment:
| Q |
81 |
ccaatcatgtccaagaacaaaaagagcccaaaacattgtcccttgagaaatccaatagattggccaaaagatccagttattgaaatgaattgcagcagca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25840831 |
ccaatcatgtccaagaacaaaaagagcccaaaacattgtcccttgagaaatccaatagattggccaaaagatccagttattgaaatgaattgcagcagca |
25840930 |
T |
|
| Q |
181 |
atcaatgcaatgacaatgaacaaatctcttagaacgtaaccaagagaaatccatggattcttgacccagcaatgttttggaatggcagcacgaatctctg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25840931 |
atcaatgcaatgacaatgaacaaatctcttagaacgtaaccaagagaaatcaatggattcttgacccagcaatgttttggaatggcagcacgaatctctg |
25841030 |
T |
|
| Q |
281 |
caatcttgaatg |
292 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25841031 |
caatcttgaatg |
25841042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 81 - 292
Target Start/End: Original strand, 30186941 - 30187152
Alignment:
| Q |
81 |
ccaatcatgtccaagaacaaaaagagcccaaaacattgtcccttgagaaatccaatagattggccaaaagatccagttattgaaatgaattgcagcagca |
180 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||| | |||||| ||||||||||| |||||||| || ||||||||| || |
|
|
| T |
30186941 |
ccaatcatgtccaagaacaaaaattgcccaaaacattgttccttgaagaggccaataaattggccaaaaataccagttatcaaacctaattgcagctaca |
30187040 |
T |
|
| Q |
181 |
atcaatgcaatgacaatgaacaaatctcttagaacgtaaccaagagaaatccatggattcttgacccagcaatgttttggaatggcagcacgaatctctg |
280 |
Q |
| |
|
||||||||| | |||| | || |||||| ||||| |||| ||||| |||||| ||||| ||||| |||||||||||||| ||||| | ||| |||| |
|
|
| T |
30187041 |
atcaatgcagtaacaaccaccacatctctaagaacataacttagagatctccatgtgttcttcacccaacaatgttttggaatagcagctctaatatctg |
30187140 |
T |
|
| Q |
281 |
caatcttgaatg |
292 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
30187141 |
ctatcttaaatg |
30187152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 25268994 - 25269040
Alignment:
| Q |
81 |
ccaatcatgtccaagaacaaaaagagcccaaaacattgtcccttgag |
127 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
25268994 |
ccaatcatgaccaagaacaaaaagagcccaaaacatggttccttgag |
25269040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 4704666 - 4704599
Alignment:
| Q |
81 |
ccaatcatgtccaagaacaaaaagagcccaaaacattgtcccttgagaaatccaatagattggccaaa |
148 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| || ||||||| | |||||| | |||||||| |
|
|
| T |
4704666 |
ccaatcatgaccaagaacaaagagagcccaaaacatggttccttgagcagcccaataaagtggccaaa |
4704599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University