View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6806_high_7 (Length: 248)
Name: NF6806_high_7
Description: NF6806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6806_high_7 |
 | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0144 (3 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 16780272 - 16780048
Alignment:
| Q |
6 |
gagatggacatcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgag |
105 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
16780272 |
gagattgacatcaactccttttagaattggggagttaacttgtctgaaaacattgactactttcattgttggttcaaaaaatgggtttggtttagcagag |
16780173 |
T |
|
| Q |
106 |
ttacacaacttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatg |
205 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||| |||||||| ||||||||||||| | |
|
|
| T |
16780172 |
ctacacaacttgcaattaggaggcaagctacacatcaaaggccttcagaaagtgttgaatgaagaggatgcaagaaaagctaatttgattggcaagaagg |
16780073 |
T |
|
| Q |
206 |
acttaaattgcttatatttgtcatg |
230 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
16780072 |
acttaaatcgcttatatttgtcatg |
16780048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 17068585 - 17068377
Alignment:
| Q |
22 |
ccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaacttacaac |
121 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| |||||| |||| |||||||||||| | ||||||| | ||| |||| ||||||||| |
|
|
| T |
17068585 |
ccttttagaattggggagttaactagtctgaaaacattgaccaatttcatagttgattcaaaaactggttatggtttagcagagctacaaaacttacaat |
17068486 |
T |
|
| Q |
122 |
taggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaattgcttata |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| | |||||||| ||| ||||||||| ||||||||| ||||||| |
|
|
| T |
17068485 |
taggaggcaagctacacatcaaaggccttcagaatgtgtcgaaagaagaggatgctaaaaaagctaatttgaatggcaagaaggacttaaatagcttata |
17068386 |
T |
|
| Q |
222 |
tttgtcatg |
230 |
Q |
| |
|
||||||||| |
|
|
| T |
17068385 |
tttgtcatg |
17068377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 16869063 - 16869278
Alignment:
| Q |
15 |
atcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaac |
114 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||| |||| |||||||||||| |||||| ||||||||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
16869063 |
atcaactcctttcagaattggagagttaactagtctgcaaacattgaccaatttcatggttggttcaaaaactgggtttggtttagcagagctacacaag |
16869162 |
T |
|
| Q |
115 |
ttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaatt |
214 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| || ||||||||| ||||||||| |||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
16869163 |
ttacaattaggaggcaagctatacatcaaaggtcttgagaatgtgtcgaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatc |
16869262 |
T |
|
| Q |
215 |
gcttatatttgtcatg |
230 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16869263 |
gcttatatttgtcatg |
16869278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 16986543 - 16986328
Alignment:
| Q |
15 |
atcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaac |
114 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||| | ||||||||||||||| |||||| ||||||| | ||||||||||||||||| | ||| |||||||| |
|
|
| T |
16986543 |
atcaactccttttagaattagggagttaacttgtttgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaac |
16986444 |
T |
|
| Q |
115 |
ttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaatt |
214 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| ||||||||| || |||||||||||| |||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
16986443 |
ttacaattaggaggcaagctatacatcaaaggccttgagaatgtgtcaaataaagaggatgctaaagaagctaatttgattggaaagaaggacttaaata |
16986344 |
T |
|
| Q |
215 |
gcttatatttgtcatg |
230 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16986343 |
gcttatatttgtcatg |
16986328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 16796252 - 16796037
Alignment:
| Q |
15 |
atcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaac |
114 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||| |||||||||||| |||||| |||| |||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
16796252 |
atcaactccttttagaattggggagttatctagtctgcaaacattgaccaatttcatagttgattcaaaaactgggtttggtttagcagagctacacaac |
16796153 |
T |
|
| Q |
115 |
ttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaatt |
214 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||||| |||||||||| || || |||||||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
16796152 |
ttacaattaggaggcaggctatacatcaaaggccttgagaatgtgttaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatc |
16796053 |
T |
|
| Q |
215 |
gcttatatttgtcatg |
230 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
16796052 |
acctatatttgtcatg |
16796037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 16657101 - 16656886
Alignment:
| Q |
15 |
atcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaac |
114 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||| ||| ||||||||| | |||||| ||||||| | ||||||||||||||||| | ||| |||||||| |
|
|
| T |
16657101 |
atcaactccttttaaaattggggagttaactagtctccaaacattgaactatttcatagttggtttagaaactgggtttggtttagcagagctacacaac |
16657002 |
T |
|
| Q |
115 |
ttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaatt |
214 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| ||||||||| | || |||||||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
16657001 |
ttacaattaggaggcaagctatacatcaaaggccttgagaatgtgtcaattgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatc |
16656902 |
T |
|
| Q |
215 |
gcttatatttgtcatg |
230 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16656901 |
gcttatatttgtcatg |
16656886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 16787049 - 16786841
Alignment:
| Q |
22 |
ccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaacttacaac |
121 |
Q |
| |
|
||||||| ||||||| ||||||||| ||||||||||| | ||| ||||||||||| |||||||||||| | ||||||| | ||| || |||| || || |
|
|
| T |
16787049 |
ccttttaaaattgggaagttcacttgtctgaaaacatggtccattttcattgttgattcaaaaactggttatggtttagccgagctatgcaacctataat |
16786950 |
T |
|
| Q |
122 |
taggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaattgcttata |
221 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||||| | ||| |||||| |||||||||| |||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
16786949 |
taggaggaaatctacacatcaaagtccttgagaatgtatcgaatgaagagcatgctagagacgctaatttgattggcaagaaggacttaaatcgcttata |
16786850 |
T |
|
| Q |
222 |
tttgtcatg |
230 |
Q |
| |
|
||||||||| |
|
|
| T |
16786849 |
tttgtcatg |
16786841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 16842885 - 16842719
Alignment:
| Q |
22 |
ccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaacttacaac |
121 |
Q |
| |
|
||||||| |||||||| ||| ||| ||||| |||||||| || ||||||||| ||||| | |||||||||||||| | ||| |||| |||||| ||| |
|
|
| T |
16842885 |
ccttttaaaattggggggttaactcatctgagaacattgagcattttcattgtacgttcagaggctgggtttggtttagcagagctacataacttagaac |
16842786 |
T |
|
| Q |
122 |
taggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaa |
188 |
Q |
| |
|
|| ||||||| ||||||||||||||||| | |||||| ||| ||| |||||||||||||||||| |
|
|
| T |
16842785 |
taagaggcaaactacacatcaaaggccttgaaaatgtgacgaatgaaagggatgctagagaagctaa |
16842719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 18807348 - 18807477
Alignment:
| Q |
89 |
ggtttggtttaactgagttacacaacttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaa |
188 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||||||||||||||||||| |||||| ||||||| | | ||| |||||||| ||||||||| |
|
|
| T |
18807348 |
ggtttggtttagcagagttacatgacttacaactaggaggcaagctacacatcagaggccttgagaatgtatctagtgaatgggatgctaaagaagctaa |
18807447 |
T |
|
| Q |
189 |
tatgattggcaagaatgacttaaattgctt |
218 |
Q |
| |
|
| ||||||| || || || ||||||||||| |
|
|
| T |
18807448 |
tttgattggtaaaaaggagttaaattgctt |
18807477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 18874294 - 18874474
Alignment:
| Q |
38 |
agttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaacttacaactaggaggcaagctaca |
137 |
Q |
| |
|
|||| |||| ||| ||||| |||| |||||||||||| | || || | |||||||||||| | ||||||| || |||||||||||||||||||||| |
|
|
| T |
18874294 |
agttaacttgtctcaaaactttgagcactttcattgtggaatcgaaggcggggtttggtttagcacagttacatgacctacaactaggaggcaagctaca |
18874393 |
T |
|
| Q |
138 |
catcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaattgctt |
218 |
Q |
| |
|
||||| |||||| ||||||| | | ||| |||||||| |||||||||| ||||||| || || || |||||| |||| |
|
|
| T |
18874394 |
catcagaggccttgagaatgtatctagtgaatgggatgctaaagaagctaatttgattggtaaaaaggagttaaatcgctt |
18874474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 16911258 - 16911303
Alignment:
| Q |
111 |
caacttacaactaggaggcaagctacacatcaaaggcctccagaat |
156 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
16911258 |
caacttacaaccaggagacaacctacacatcaaaggccttcagaat |
16911303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 16916462 - 16916507
Alignment:
| Q |
111 |
caacttacaactaggaggcaagctacacatcaaaggcctccagaat |
156 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
16916462 |
caacttacaaccaggagacaacctacacatcaaaggccttcagaat |
16916507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 17150 - 16929
Alignment:
| Q |
6 |
gagatggacatcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgag |
105 |
Q |
| |
|
||||| |||||| || ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17150 |
gagattgacatctactcctttcagaattggggagttaacttgtctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttagtagag |
17051 |
T |
|
| Q |
106 |
ttacacaacttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatg |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| | | |||||||| ||||||||||||| | |
|
|
| T |
17050 |
ctacacaacttacaattaggaggcaagctacacatcaaaggccttcagaaagtgtcgaatgaagaggatgcaaaacaagctaatttgattggcaagaagg |
16951 |
T |
|
| Q |
206 |
acttaaattgcttatatttgtc |
227 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
16950 |
acttaaatcgcttatatttgtc |
16929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 11941 - 11726
Alignment:
| Q |
15 |
atcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaac |
114 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
11941 |
atcaactccttttaaaattggggagttaacttgtctgaaaacattgaccattttcattgttggttcaaaaactgggtttggtttagcagagctacacaac |
11842 |
T |
|
| Q |
115 |
ttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaatt |
214 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||||||| ||||| |||| || ||||||||||| ||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
11841 |
ttacaattaggaggaaagctacacattaaaggccttcagaaagtgtcgattgaagaggatgcaagaaaagctaatttgattggcaagaaggacttaaatc |
11742 |
T |
|
| Q |
215 |
gcttatatttgtcatg |
230 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11741 |
gcttatatttgtcatg |
11726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 7562 - 7357
Alignment:
| Q |
22 |
ccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaacttacaac |
121 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||||||||| | |||||||||||||||||||||||||| ||||||| | || ||||||||||||| |
|
|
| T |
7562 |
ccttttagaattgggcagttaactagcctgaaaacattgacgattttcattgttggttcaaaaactgggtatggtttagcacagctacacaacttacagt |
7463 |
T |
|
| Q |
122 |
taggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaattgcttata |
221 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||| |||||||||||||||||||||| ||||| ||||| ||||||| ||||| || | ||||| |
|
|
| T |
7462 |
taggaggcaagctacacatcaaatgtcttgagaatgtgtcgaacgaagaggatgctagagaaactaatttgattagcaagaaggacttggatcgtttata |
7363 |
T |
|
| Q |
222 |
tttgtc |
227 |
Q |
| |
|
|||||| |
|
|
| T |
7362 |
tttgtc |
7357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 8246 - 8031
Alignment:
| Q |
15 |
atcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaac |
114 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| | |||||| |||||||| |||||||||||||||||||||||||| ||||||| | ||| |||| ||| |
|
|
| T |
8246 |
atcaactccttttagaattggggagttaacttgtttgaaaaaattgaccattttcattgttggttcaaaaactgggtatggtttagcagagctacaaaac |
8147 |
T |
|
| Q |
115 |
ttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaatt |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| || || |||| || ||||||||||| ||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
8146 |
ttacaattaggaggcaagctacacatcaaacgccttcacaaagtgtcaaatgaagaggatgcaagaaaagctaatttgattggcaagaaggacttaaatc |
8047 |
T |
|
| Q |
215 |
gcttatatttgtcatg |
230 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8046 |
gcttatatttgtcatg |
8031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 38940428 - 38940643
Alignment:
| Q |
15 |
atcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaac |
114 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| | |||||| |||||||| |||||||||||||||||||||||| ||||||||| | ||| |||||||| |
|
|
| T |
38940428 |
atcaactccttttagaattggggagttaacttgtttgaaaaaattgaccattttcattgttggttcaaaaactggttttggtttagcagagctacacaac |
38940527 |
T |
|
| Q |
115 |
ttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaatt |
214 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| || || || | ||| |||||||||| ||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
38940528 |
ttacaattaggaggcaagctacatatcaaaggccttcaaaaagtctcgaataaagaggatgcaagaaaagctaatttgattggcaagaaggacttaaatc |
38940627 |
T |
|
| Q |
215 |
gcttatatttgtcatg |
230 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38940628 |
gcttatatttgtcatg |
38940643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 7054341 - 7054548
Alignment:
| Q |
15 |
atcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaac |
114 |
Q |
| |
|
|||||| || ||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||| |
|
|
| T |
7054341 |
atcaactccctttagaattggggagttaacttgtctgaaaacattgaccgttttcattgttggatcaaaaactgggtttggtttagcagagttacacaac |
7054440 |
T |
|
| Q |
115 |
ttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaatt |
214 |
Q |
| |
|
|||||| ||||||||| ||| ||||||| |||||| ||||||||| ||||| | ||||||||||||||||||| |||||||||| || ||||||||| |
|
|
| T |
7054441 |
ttacaattaggaggcatgcttcacatcagaggccttgagaatgtgtccaacgacggggatgctagagaagctaatttgattggcaataaggacttaaatc |
7054540 |
T |
|
| Q |
215 |
gcttatat |
222 |
Q |
| |
|
|||||||| |
|
|
| T |
7054541 |
gcttatat |
7054548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 35153 - 34936
Alignment:
| Q |
15 |
atcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaac |
114 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| | ||||||||||||||| |||||| ||||||||| |||||| |||||||||| | ||| |||||||| |
|
|
| T |
35153 |
atcaactccttttagaattggggagttaacttgtttgaaaacattgaccaatttcatagttggttcagaaactgagtttggtttagcagagctacacaac |
35054 |
T |
|
| Q |
115 |
ttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaatt |
214 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||| ||||||||| | | || |||||||||||| |||| ||| ||||||||||||| ||||||||| |
|
|
| T |
35053 |
ttacaattaggaggcaagctatacatcaatggccttgagaatgtgtcggatgaggaggatgctagaaaagcaaatttgattggcaagaaagacttaaatc |
34954 |
T |
|
| Q |
215 |
gcttatatttgtcatgag |
232 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34953 |
gcttatatttgtcatgag |
34936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 36579 - 36364
Alignment:
| Q |
15 |
atcaaccccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaac |
114 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||| ||| |||||||||||| |||||| |||| |||||||| ||| ||| ||||| | ||| |||||||| |
|
|
| T |
36579 |
atcaactccttttaaaattggggagttaactagtctccaaacattgaccaatttcatagttgattcaaaaattggttttcgtttagcagagctacacaac |
36480 |
T |
|
| Q |
115 |
ttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaatt |
214 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||| ||||||||| || || |||||||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
36479 |
ttacaattaggaggcaagttatacatcaaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatc |
36380 |
T |
|
| Q |
215 |
gcttatatttgtcatg |
230 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36379 |
gcttatatttgtcatg |
36364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 2892 - 3051
Alignment:
| Q |
38 |
agttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaacttacaactaggaggcaagctaca |
137 |
Q |
| |
|
|||| |||| ||| |||||||||| ||||||||| || ||||| || | ||||| |||||| | ||||||| |||||||| |||||||||||||||| |
|
|
| T |
2892 |
agttaacttgtctaaaaacattgagcactttcatcgtgggttcgaagatggggttcggtttagcagagttacgtgacttacaattaggaggcaagctaca |
2991 |
T |
|
| Q |
138 |
catcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattgg |
197 |
Q |
| |
|
|||||||||||| ||||||||| | ||| |||||||| |||||||||| ||||||| |
|
|
| T |
2992 |
catcaaaggccttgagaatgtgtcaagtgaatgggatgctaaagaagctaatttgattgg |
3051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 230
Target Start/End: Complemental strand, 13377168 - 13376963
Alignment:
| Q |
25 |
tttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaacttacaactag |
124 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||||||||||| |||||||||||| || ||| ||||||||||||| ||||| | || ||||||||| ||| |
|
|
| T |
13377168 |
tttagaatcagggagttaacttgtctgaaaacattgaccattttcattgttggctcggaaattgggtttggtttagctgagctgcaaaacttacaattag |
13377069 |
T |
|
| Q |
125 |
gaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaattgcttatattt |
224 |
Q |
| |
|
|||| || |||||||||| |||||| |||||||||| ||||||| |||||||| |||||||||| ||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
13377068 |
gaggaaaactacacatcagaggccttcagaatgtgtcaaacgaaggggatgctaaagaagctaatttgattggaaagaaagacttaaatcacttatattt |
13376969 |
T |
|
| Q |
225 |
gtcatg |
230 |
Q |
| |
|
|||||| |
|
|
| T |
13376968 |
gtcatg |
13376963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 20153523 - 20153314
Alignment:
| Q |
22 |
ccttttagaattggggagttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaacttacaac |
121 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| || |||| |||||| |
|
|
| T |
20153523 |
ccttttagaattggggagttaacttgtctgaaaacattgaccactttcattgttggttcaaaaact-ggtatggtttagaagagctaaacaagttacaat |
20153425 |
T |
|
| Q |
122 |
taggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaattgcttata |
221 |
Q |
| |
|
||||||| |||||| |||||||| ||||| ||||||||| || |||||| ||||||||| || |||| ||||| ||||| | ||| |||| |||||| |
|
|
| T |
20153424 |
taggaggaaagctatacatcaaaagcctcaagaatgtgtcaaatgaagagtatgctagaggagataatttgattagcaag-aggacataaaacacttata |
20153326 |
T |
|
| Q |
222 |
tttgtcatgagg |
233 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20153325 |
tttgtcatgagg |
20153314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 8410 - 8218
Alignment:
| Q |
38 |
agttcacttctctgaaaacattgaccactttcattgttggttcaaaaactgggtttggtttaactgagttacacaacttacaactaggaggcaagctaca |
137 |
Q |
| |
|
|||| |||| ||| ||||| || | |||||||||||| |||| || | |||||||||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
8410 |
agttaacttgtctcaaaactttaagcactttcattgtgggtttgaaggcggggtttggtttagcagagttacatgacttacaactaggaggcaagctaca |
8311 |
T |
|
| Q |
138 |
catcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagctaatatgattggcaagaatgacttaaattgcttatatttgtcatg |
230 |
Q |
| |
|
||||| |||||| ||||||| | | ||| |||||||| |||||||||| ||||||| || || || |||||| |||| || |||||||| |
|
|
| T |
8310 |
catcagaggccttgagaatgtatctagtgaatgggatgctaaagaagctaatttgattggtaaaaaggagttaaatcgcttgtacttgtcatg |
8218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 3679 - 3537
Alignment:
| Q |
88 |
gggtttggtttaactgagttacacaacttacaactaggaggcaagctacacatcaaaggcctccagaatgtgttgaacgaagaggatgctagagaagcta |
187 |
Q |
| |
|
|||||||||||| | |||||| | |||||||||||||||||| |||||||||||||||||| ||||||| | | ||| |||||||| |||||||| |
|
|
| T |
3679 |
gggtttggtttagcagagttaaatgacttacaactaggaggcaggctacacatcaaaggccttgagaatgtatctagtgaatgggatgctaaagaagcta |
3580 |
T |
|
| Q |
188 |
atatgattggcaagaatgacttaaattgcttatatttgtcatg |
230 |
Q |
| |
|
|| ||||||| || || || |||||| |||| || |||||||| |
|
|
| T |
3579 |
atttgattggtaaaaaggagttaaatcgcttgtacttgtcatg |
3537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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