View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6806_low_1 (Length: 494)
Name: NF6806_low_1
Description: NF6806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6806_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 92 - 475
Target Start/End: Original strand, 37892692 - 37893071
Alignment:
| Q |
92 |
caacaataacaacgttaaatttgttacctatgtatgtgtcgcaaaaataaatgctaaatacaaacaaatctatctatttaattgctttccatttttattt |
191 |
Q |
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| T |
37892692 |
caacaataacaacgttaaatttgttacctatg----tgtcgcaacaataaatgctaaatacaaataaatctatctatttaattgctttccatttttattt |
37892787 |
T |
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| Q |
192 |
ttatttgactctttaattcattcctttacttgtgcaaatggaaaatgtccaccacatcacacgttctgtttgtcttcatgtgtgagttggattttttatt |
291 |
Q |
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| T |
37892788 |
ttatttgactctttaattcattcctttacttgtgcaaatggaaaatgtccaccacatcacacgttctgtttgtcttcatgtgtgagttggattttttatt |
37892887 |
T |
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| Q |
292 |
tcattttcatatcaactttcttcttcctaacttatgtgcaaactactcatttcattttcaacccattagttttgttacacacacgttctgtatataatct |
391 |
Q |
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| T |
37892888 |
tcattttcatatcaactttcttcttcctaacttatgtgcaaactactcatttcattttcaacccactagttttgttacacacacgttctgtatataatct |
37892987 |
T |
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| Q |
392 |
ggattttgttcattagaaaataatataatagagacgcatgtgcaatatttttattttaatgaaatgtgcatctaatgtatgatt |
475 |
Q |
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| T |
37892988 |
ggattttgttcattagaaaataatataatagagatgcatgtgcaatatttttattttaatgacatgtgcatctaatgtatgatt |
37893071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 37892615 - 37892656
Alignment:
| Q |
15 |
gggctggtgctaggttgtgatgatattgggggcgttctcttc |
56 |
Q |
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| T |
37892615 |
gggctggtgctaggttgtgatgatattgggggcgttctcttc |
37892656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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