View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6806_low_6 (Length: 275)
Name: NF6806_low_6
Description: NF6806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6806_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 102 - 271
Target Start/End: Original strand, 32489203 - 32489372
Alignment:
| Q |
102 |
ggagattaagtacaaaaatgagggaggggaccaaaccaaaactccctcaagaagaagaaaacctaaaattaggtataacaattgtgctcttgacataagt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32489203 |
ggagattaagtacaaaaatgagggagggaaccaaaccaaaactccctcaagaagaagaaaacctaaaattaggtataacaattgtgctcttgacataagt |
32489302 |
T |
|
| Q |
202 |
ttcccttgcaaataaagatatattaggccagtaaacataagattttaaagataaaccaaagttttcaagg |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
32489303 |
ttcccttgcaaataaagatatattaggccagtaaacataagattttaaagatagaccaaagtttgcaagg |
32489372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 44883109 - 44883049
Alignment:
| Q |
102 |
ggagattaagtacaaaaatgagggaggggaccaaaccaaaactccctcaagaagaagaaaa |
162 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
44883109 |
ggagaataggtacaaaaaagagggaggggaccaaaccaagattccctcaagaagatgaaaa |
44883049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 41341754 - 41341689
Alignment:
| Q |
111 |
gtacaaaaatgagggaggggaccaaaccaaaactccctcaagaagaagaaaacctaaaattaggta |
176 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
41341754 |
gtacaaaatagagggaggggaccaaagcaaaactccctcaagaagcagaaaacttataattaggta |
41341689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 11527151 - 11527092
Alignment:
| Q |
112 |
tacaaaaatgagggaggggaccaaaccaaaactccctcaagaagaagaaaacctaaaattagg |
174 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
11527151 |
tacaaaaagaagggaggggaccaaaccaaaactccct---gatgaagagaacctaaaattagg |
11527092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 42877912 - 42877865
Alignment:
| Q |
121 |
gagggaggggaccaaaccaaaactccctcaagaagaagaaaacctaaa |
168 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
42877912 |
gagggaggggaccaaaccaaaactcccttagtgagaagaaaacctaaa |
42877865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University