View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6806_low_9 (Length: 229)
Name: NF6806_low_9
Description: NF6806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6806_low_9 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0279 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 27528627 - 27528768
Alignment:
| Q |
88 |
aatttattcctatggatgtatttgaaaaccgaattagattgtctaatgataagaggaaaataaaatatttaactaaaatatatgatcctatcttgaatgg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27528627 |
aatttattcctatggatgtatttgaaaaccgaattagattatctaatgataaaaggaaaataaaatattcaactaaaatatatgatcctatcttgaatgg |
27528726 |
T |
|
| Q |
188 |
accttttcaccatcaattcaaaatgaaacttacacaacaaat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
27528727 |
accttttcaccatcaattcaaaatgaaacttacacaacaaat |
27528768 |
T |
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Target: scaffold0279 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 22508 - 22630
Alignment:
| Q |
88 |
aatttattcctatggatgtatttgaaaaccgaattagattgtctaatgataagaggaaaataaaatatttaactaaaatatatgatcctatcttgaatgg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22508 |
aatttattcctatggatgtatttgaaaaccgaattagattatctaatgataaaaggaaaataaaatattcaactaaaatatatgatcctatcttgaatgg |
22607 |
T |
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| Q |
188 |
accttttcaccatcaattcaaaa |
210 |
Q |
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||||||||||||||||||||||| |
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| T |
22608 |
accttttcaccatcaattcaaaa |
22630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 498855 - 498962
Alignment:
| Q |
88 |
aatttattcctatggatgtatttgaaaaccgaattagattgtctaatgataagaggaaaataaaatatttaactaaaatatatgatcctatcttgaatgg |
187 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
498855 |
aatttattcctgtggatgtatttgaaaaccgaattagattgtctaatgataagaggaaaataaaatatttaactaaaatatatgatcctttcttgaatgg |
498954 |
T |
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| Q |
188 |
accttttc |
195 |
Q |
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|||||||| |
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| T |
498955 |
accttttc |
498962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 498973 - 499012
Alignment:
| Q |
190 |
cttttcaccatcaattcaaaatgaaacttacacaacaaat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
498973 |
cttttcaccatcaattcaaaatgaaacttacacaacaaat |
499012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 21408291 - 21408184
Alignment:
| Q |
88 |
aatttattcctatggatgtatttgaaaaccgaattagattgtctaatgataagaggaaaataaaatatttaactaaaatatatgatcctatcttgaatgg |
187 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21408291 |
aatttattcttgtggatgtatttgaaaaccgaattagattgtctaatgataagaggaaaataaaatatttaactaaaatatatgatcctttcttgaatgg |
21408192 |
T |
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| Q |
188 |
accttttc |
195 |
Q |
| |
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|||||||| |
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| T |
21408191 |
accttttc |
21408184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 34836049 - 34835945
Alignment:
| Q |
88 |
aatttattcctatggatgtatttgaaaaccgaattagattgtctaatgataagaggaaaataaaatatttaactaaaatatatgatcctatcttgaatgg |
187 |
Q |
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||||||||| | ||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34836049 |
aatttattcatgtggatatatttaaaaaccgaattagattgtctaataataagagaaaaataaaatatttaactaaaatatatgatcctttcttgaatgg |
34835950 |
T |
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| Q |
188 |
acctt |
192 |
Q |
| |
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||||| |
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| T |
34835949 |
acctt |
34835945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 22644292 - 22644363
Alignment:
| Q |
88 |
aatttattcctatggatgtatttgaaaaccgaattagattgtctaatgataagaggaaaataaaatatttaa |
159 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22644292 |
aatttattcctttggatgtatttgaaaactgaattagattgtctaatgataagaggaaaataaaatgtttaa |
22644363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 12113711 - 12113642
Alignment:
| Q |
88 |
aatttattcctatggatgtatttgaaaaccgaattagattgtctaatgataagaggaaaataaaatattta |
158 |
Q |
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||||||||| | ||||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||| |
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| T |
12113711 |
aatttattcttgtggatatatttgaaa-ccaaattagattgtctaatgataagaggaaaagtaaatattta |
12113642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 47448683 - 47448644
Alignment:
| Q |
190 |
cttttcaccatcaattcaaaatgaaacttacacaacaaat |
229 |
Q |
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|||||||||||||||| |||||||||||| |||||||||| |
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| T |
47448683 |
cttttcaccatcaatttaaaatgaaacttccacaacaaat |
47448644 |
T |
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