View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6807_high_12 (Length: 247)

Name: NF6807_high_12
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6807_high_12
NF6807_high_12
[»] chr6 (11 HSPs)
chr6 (11-247)||(33641858-33642094)
chr6 (11-247)||(33060158-33060394)
chr6 (11-247)||(31566365-31566601)
chr6 (11-247)||(33307089-33307325)
chr6 (11-247)||(33361101-33361337)
chr6 (11-247)||(33265485-33265721)
chr6 (11-247)||(33274629-33274865)
chr6 (11-247)||(33390676-33390912)
chr6 (11-247)||(33403214-33403450)
chr6 (13-244)||(33412523-33412754)
chr6 (56-208)||(33288223-33288375)
[»] chr2 (1 HSPs)
chr2 (11-247)||(17437930-17438166)
[»] scaffold1749 (1 HSPs)
scaffold1749 (10-247)||(748-985)
[»] scaffold0428 (1 HSPs)
scaffold0428 (10-247)||(9509-9746)
[»] chr4 (5 HSPs)
chr4 (65-221)||(31501393-31501549)
chr4 (65-201)||(31496243-31496379)
chr4 (85-244)||(31488845-31489004)
chr4 (85-119)||(31159950-31159984)
chr4 (174-243)||(31476261-31476330)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 33642094 - 33641858
Alignment:
Q  11 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33642094 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 33641995  T
Q  111 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33641994 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 33641895  T
Q  211 cataatgccttttgattcaagggcatcaaaaagaaaa 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  33641894 cataatgccttttgattcaagggcatcaaaaagaaaa 33641858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 33060158 - 33060394
Alignment:
Q  11 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 110  Q
    |||||||| |||| |||||||||||||||| |  | |||| |||||||||||| ||||| ||||||||||| | |||||| |||||||||||||||||      
T  33060158 acatcatagaaaacaggaagaacatgttttcccgaccccttaatgcattcacatatcttttctaattcttgcaagcaccacgttgaggaagcatagttct 33060257  T
Q  111 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 210  Q
    |||||||||  || |||||||| |||||| |||||||||| |||| |||||||| ||||||  ||||||||||||||||||||||| |||||||||||||    
T  33060258 ttgagaagatcgcaacgtaaacctgagatatttcgattgcacgaaaaagctcaggtcctatgcattcacctttttgaagattaatgacatcccgaaatac 33060357  T
Q  211 cataatgccttttgattcaagggcatcaaaaagaaaa 247  Q
    |||||||||||||| ||||||||||||||||||||||    
T  33060358 cataatgccttttgtttcaagggcatcaaaaagaaaa 33060394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 31566601 - 31566365
Alignment:
Q  11 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 110  Q
    |||||||| |||| | ||||||||||||||||  || |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||    
T  31566601 acatcatagaaaacaagaagaacatgtttttcagattcctcaatgcattcacaaatcttctctaattcttgcaagcaccatgtcgaggaagcataatttc 31566502  T
Q  111 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 210  Q
    |||||||||| || ||  |||||||||||| || ||||||||||||||||||||  |||||  |||||||||||||||||||  | ||||||||||||||    
T  31566501 ttgagaagacggcaacaaaaacatgagatccttggattgctcgaagaagctcaggccctatggattcacctttttgaagatttgtatcatcccgaaatac 31566402  T
Q  211 cataatgccttttgattcaagggcatcaaaaagaaaa 247  Q
     | ||| ||||||| ||||| ||||||||||||||||    
T  31566401 aaaaataccttttgtttcaaaggcatcaaaaagaaaa 31566365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 33307089 - 33307325
Alignment:
Q  11 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 110  Q
    ||||||||||||| |||||||| |||||||    ||| || || ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| |    
T  33307089 acatcataaaaaacaggaagaatatgttttctggatctctgaacgcatttacatatcttctctaattcttgcaggcaccatgttgaggaagcatagttcc 33307188  T
Q  111 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 210  Q
    ||||||||||||| ||  ||||  |||||| ||||||||||||||| ||||||| | ||||| ||||||| |||||||||||| |||||||||||||| |    
T  33307189 ttgagaagactgcaacaaaaacccgagatccttcgattgctcgaaggagctcaggttctatagattcacccttttgaagattagtgtcatcccgaaatgc 33307288  T
Q  211 cataatgccttttgattcaagggcatcaaaaagaaaa 247  Q
     | ||||||||||| ||||||||||||||||||||||    
T  33307289 aaaaatgccttttgtttcaagggcatcaaaaagaaaa 33307325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 33361101 - 33361337
Alignment:
Q  11 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 110  Q
    |||||||| |||| |||||||||||||||| || |||||| |||||||||||| ||||| ||||||||||| |  |||||||||||||||||||||||||    
T  33361101 acatcatagaaaacaggaagaacatgttttcctgatcccttaatgcattcacatatcttttctaattcttgcaaacaccatgttgaggaagcatagtttc 33361200  T
Q  111 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 210  Q
    |||| |||| ||| ||  |||| ||||||| ||||||||||||||  ||||| | ||| ||  ||||||||||| |||||||| ||||||||  ||||||    
T  33361201 ttgaaaagaatgcaacaaaaacctgagatccttcgattgctcgaatgagctcgggtccgatggattcaccttttggaagattagtgtcatccaaaaatac 33361300  T
Q  211 cataatgccttttgattcaagggcatcaaaaagaaaa 247  Q
     ||||||||||||| || |||||||||||||||||||    
T  33361301 aataatgccttttgtttgaagggcatcaaaaagaaaa 33361337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 33265485 - 33265721
Alignment:
Q  11 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 110  Q
    |||||||| ||||  ||||||||||||||| || |||||| || ||||||||| ||||| ||||||||||| |  ||||||||||||||||||||||||     
T  33265485 acatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaccatgttgaggaagcatagttta 33265584  T
Q  111 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 210  Q
    |||| ||||| || ||  |||| ||||||| ||||||||||||||| ||||| | ||| ||  ||||||||||| |||||||| ||||||||  ||||||    
T  33265585 ttgaaaagaccgcaacaaaaacttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttggaagattagtgtcatccgaaaatac 33265684  T
Q  211 cataatgccttttgattcaagggcatcaaaaagaaaa 247  Q
     ||||||||||||| || |||||||||||||||||||    
T  33265685 aataatgccttttgtttgaagggcatcaaaaagaaaa 33265721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 33274629 - 33274865
Alignment:
Q  11 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 110  Q
    |||||||| ||||  ||||||||||||||| || |||||| || ||||||||| ||||| ||||||||||| |  ||||||||||||||||||||||||     
T  33274629 acatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattcttgtaaacaccatgttgaggaagcatagttta 33274728  T
Q  111 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 210  Q
    |||| ||||| || ||  |||| ||||||| ||||||||||||||| ||||| | ||| ||  ||||||||||| |||||||| ||||||||  ||||||    
T  33274729 ttgaaaagaccgcaacaaaaacttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttggaagattagtgtcatccgaaaatac 33274828  T
Q  211 cataatgccttttgattcaagggcatcaaaaagaaaa 247  Q
     ||||||||||||| || |||||||||||||||||||    
T  33274829 aataatgccttttgtttgaagggcatcaaaaagaaaa 33274865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 33390676 - 33390912
Alignment:
Q  11 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 110  Q
    ||||||||||||| |||||||||| |||||||  |||| |  |  ||||| ||||||||||||| |||||| |  |||||||||||| ||||||||||||    
T  33390676 acatcataaaaaacaggaagaacaagtttttcggatccttggacacattcccaaatcttctctatttcttgcaaacaccatgttgagaaagcatagtttc 33390775  T
Q  111 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 210  Q
    ||||||| || || || ||||| ||||||| |||||||| | ||||||| |||| ||||||  |||||||||||||||||||  ||| ||||||||||||    
T  33390776 ttgagaaaaccgcaacataaacctgagatccttcgattgattgaagaagttcaggtcctatggattcacctttttgaagatttctgttatcccgaaatac 33390875  T
Q  211 cataatgccttttgattcaagggcatcaaaaagaaaa 247  Q
     | ||||||||||| ||| ||||||||||||||||||    
T  33390876 aagaatgccttttgtttccagggcatcaaaaagaaaa 33390912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 33403214 - 33403450
Alignment:
Q  11 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 110  Q
    |||||||| |||| ||||| |||||||||||   |||||| || ||||||||| ||||||||||||||||  | |||||||||||||||||||||||| |    
T  33403214 acatcatagaaaacaggaataacatgttttttggatcccttaacgcattcacatatcttctctaattcttttaagcaccatgttgaggaagcatagttcc 33403313  T
Q  111 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 210  Q
    |||| |||||  | ||| |||| ||| ||| || |||||||||||||||||| | | |||   ||||||| | |||||||||| ||||||| |||||| |    
T  33403314 ttgaaaagacgacaacgaaaacctgaaatcctttgattgctcgaagaagctcgggttctaaggattcaccctgttgaagattagtgtcatctcgaaatgc 33403413  T
Q  211 cataatgccttttgattcaagggcatcaaaaagaaaa 247  Q
     | ||||||||||| ||||||||||||||||||||||    
T  33403414 aaaaatgccttttgtttcaagggcatcaaaaagaaaa 33403450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 33412523 - 33412754
Alignment:
Q  13 atcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttctt 112  Q
    ||||||||||| ||||||||| ||||||||   ||||| ||  |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||    
T  33412523 atcataaaaaacaggaagaacgtgtttttcaggtccctgaacacattcacagatcttttctaattcttgcaggcaccatgttgaggaagcatagttcctt 33412622  T
Q  113 gagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatacca 212  Q
    || |||||||| ||| |||| ||||||| ||||||||| ||||| ||||||| ||||||   ||||||||||| ||||||  ||||||||| |||| |      
T  33412623 gaaaagactgcgacgaaaacctgagatccttcgattgcacgaaggagctcaggtcctatgacttcaccttttttaagatttgtgtcatccctaaatgcat 33412722  T
Q  213 taatgccttttgattcaagggcatcaaaaaga 244  Q
     ||| ||||| | |||||| ||||||||||||    
T  33412723 aaatacctttggtttcaagtgcatcaaaaaga 33412754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 33288223 - 33288375
Alignment:
Q  56 cattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagactgctacgtaaacatgagatctttcgattgctcgaa 155  Q
    |||||||| ||||| |||||||| || | ||||||||||||||||||||||||||||||||| ||||| ||| |||| || |||| ||||||||||||||    
T  33288223 cattcacatatcttttctaattcctgcaagcaccatgttgaggaagcatagtttcttgagaatactgcaacgaaaacctgggatccttcgattgctcgaa 33288322  T
Q  156 gaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaat 208  Q
    | ||||||| ||||||  |||||||||||||||||||  ||||||||| ||||    
T  33288323 ggagctcaggtcctatggattcacctttttgaagattggtgtcatccctaaat 33288375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 17438166 - 17437930
Alignment:
Q  11 acatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttc 110  Q
    |||||||| |||| |||||||||||||||| ||    ||| || ||||||||| ||||| ||||||||||  |  |||||||||||||||||||||| ||    
T  17438166 acatcatagaaaacaggaagaacatgttttcctggcacctgaacgcattcacatatcttttctaattcttccaaacaccatgttgaggaagcatagtatc 17438067  T
Q  111 ttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaatac 210  Q
    ||||||| || || ||  |||| ||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| |||||| |    
T  17438066 ttgagaaaaccgcaacaaaaacctgagatccttctattgctcgaagaagctcagatcctatggattcacctttttgaagattagtgtcatctcgaaatgc 17437967  T
Q  211 cataatgccttttgattcaagggcatcaaaaagaaaa 247  Q
     | |||| |||||  ||||||||| ||||||||||||    
T  17437966 aaaaatgtcttttctttcaagggcgtcaaaaagaaaa 17437930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 748 - 985
Alignment:
Q  10 gacatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagttt 109  Q
    |||| |||| |||||||||||||||| |||| |  ||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  748 gacaccatagaaaataggaagaacatattttccagatcccttgatgcattcacaaatcttctctaattcttgcaggcaccatgttgaagaagcatagttt 847  T
Q  110 cttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaata 209  Q
    ||||| ||||| || ||| |||| ||||||| |||||||| |||||| ||||||| ||||||  ||||||| ||| |||||||  |||||||||  || |    
T  848 cttgataagacagcaacgaaaacctgagatccttcgattgttcgaaggagctcaggtcctatggattcaccctttggaagatttgtgtcatccctgaa-a 946  T
Q  210 ccat-aatgccttttgattcaagggcatcaaaaagaaaa 247  Q
     ||| ||| ||||||  |||||||||| |||||||||||    
T  947 gcataaataccttttctttcaagggcagcaaaaagaaaa 985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 9509 - 9746
Alignment:
Q  10 gacatcataaaaaataggaagaacatgtttttctaatccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagttt 109  Q
    |||| |||| |||||||||||||||| |||| |  ||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  9509 gacaccatagaaaataggaagaacatattttccagatcccttgatgcattcacaaatcttctctaattcttgcaggcaccatgttgaagaagcatagttt 9608  T
Q  110 cttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttttgaagattaatgtcatcccgaaata 209  Q
    ||||| ||||| || ||| |||| ||||||| |||||||| |||||| ||||||| ||||||  ||||||| ||| |||||||  |||||||||  || |    
T  9609 cttgataagacagcaacgaaaacctgagatccttcgattgttcgaaggagctcaggtcctatggattcaccctttggaagatttgtgtcatccctgaa-a 9707  T
Q  210 ccat-aatgccttttgattcaagggcatcaaaaagaaaa 247  Q
     ||| ||| ||||||  |||||||||| |||||||||||    
T  9708 gcataaataccttttctttcaagggcagcaaaaagaaaa 9746  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 31501549 - 31501393
Alignment:
Q  65 atcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcag 164  Q
    ||||| ||||||||||| | ||||||  |||||||||||||||| ||||||| ||| || ||  ||| || |||   ||| ||||| ||||||||||| |    
T  31501549 atcttttctaattcttgcaagcaccaaattgaggaagcatagttccttgagaggaccgcaacaaaaatataagaatcttcaattgcacgaagaagctcgg 31501450  T
Q  165 atcctatatattcacctttttgaagattaatgtcatcccgaaataccataatgcctt 221  Q
    || ||||  ||||||||||| |||||||| ||||||||| |||| | | ||||||||    
T  31501449 atgctatggattcaccttttggaagattagtgtcatccctaaatgcaagaatgcctt 31501393  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 201
Target Start/End: Complemental strand, 31496379 - 31496243
Alignment:
Q  65 atcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcag 164  Q
    ||||| ||||||||||| | |||| | |||||| |||||||||| ||||| |||||  | ||  |||| |||||  |||| ||||| | ||| |||| ||    
T  31496379 atcttttctaattcttgcaagcacgaagttgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggagcttag 31496280  T
Q  165 atcctatatattcacctttttgaagattaatgtcatc 201  Q
     ||||||  ||||||||||| |||||||| |||||||    
T  31496279 gtcctatggattcaccttttggaagattagtgtcatc 31496243  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 31489004 - 31488845
Alignment:
Q  85 gcaccatgttgaggaagcatagtttcttgagaagactgctacgtaaacatgagatctttcgattgctcgaagaagctcagatcctatatattcacctttt 184  Q
    |||||| |||||||||||||||||| | |||| ||| || | | |||| ||||| | ||| ||||| ||||  ||||| | | ||||  |||||||||||    
T  31489004 gcaccaagttgaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtgctatcgattcacctttt 31488905  T
Q  185 tgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaaga 244  Q
    ||||| ||| ||||||| | |||  | | ||||||||||  || ||||||| ||||||||    
T  31488904 tgaagcttagtgtcatctctaaacgcaaaaatgccttttctttgaagggcagcaaaaaga 31488845  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 31159950 - 31159984
Alignment:
Q  85 gcaccatgttgaggaagcatagtttcttgagaaga 119  Q
    ||||||||||||||||||||||||| |||||||||    
T  31159950 gcaccatgttgaggaagcatagttttttgagaaga 31159984  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 31476330 - 31476261
Alignment:
Q  174 attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaag 243  Q
    |||||||||||||||||||| ||||||||| |||| | | ||  ||||||  ||| ||||||||||||||    
T  31476330 attcacctttttgaagattagtgtcatccctaaatgcaaaaacacctttttcttcgagggcatcaaaaag 31476261  T

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