View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6807_high_17 (Length: 227)
Name: NF6807_high_17
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6807_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34162408 - 34162639
Alignment:
| Q |
1 |
tcatgtcctagcattttacaatgagtgcaaaaagagggtcgttgttcgtattgcaccgaga--------gcgtgtccctcgcggtccacaataacagttt |
92 |
Q |
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| T |
34162408 |
tcatgtcctagcattttacaatgagtgcaaaaagagggttgttgttcgtattgcaccgagactgacaacgtgtgtccctcctgttccacaataacagttt |
34162507 |
T |
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| Q |
93 |
caaacagttgctcggataagtgcacatcaatcaaaacacgtgcaaagaggccaaagcgcctgtgcatagtagcatcatgtataatcaaaggcgtgccaag |
192 |
Q |
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| T |
34162508 |
cgaacagttgctcatataagtccacatcaatcaaaacacgtgcaaagaggccaaagcacctgggcatagtagcatcatctataatcaaaggtgtgccaag |
34162607 |
T |
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| Q |
193 |
accagaagcaatttccaagagcgttgtcttac |
224 |
Q |
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| T |
34162608 |
actagaagcaatttccaagagagttgtcttac |
34162639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 52314733 - 52314506
Alignment:
| Q |
3 |
atgtcctagcattttacaatgagtgcaaaaagagggtcgttgttcgtattgcaccgagagcg--------tgtccctcgcggtccacaataacagtttca |
94 |
Q |
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| T |
52314733 |
atgtcctagcattttacaatgagtgcaaaaagagggttgttgttcatattgtaccgaaaccgacaaagtgtgtccctcccgtcccacaataacagtgtca |
52314634 |
T |
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| Q |
95 |
aacagttgctcggataagtgcacatcaatcaaaacacgtgcaaagaggccaaagcgcctgtgcatagtagcatcatgtataatcaaaggcgtgccaagac |
194 |
Q |
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| T |
52314633 |
aacagttgctcggataagtccacatcaattaaaacacgtgcaaagaggccaaagcgcctgtgcatagtagcatcatctataatcaaaggcgttcaaagac |
52314534 |
T |
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| Q |
195 |
cagaagcaatttccaagagcgttgtctt |
222 |
Q |
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| T |
52314533 |
cagaagcaatttccaagagagttgtctt |
52314506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41113236 - 41113003
Alignment:
| Q |
1 |
tcatgtcctagcattttacaatgagtgcaaaaagagggtcgttgttcgtattgcaccgaga--------gcgtgtccctcgcggtccacaataacagttt |
92 |
Q |
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| T |
41113236 |
tcatgtcctaacattttacaatgagtgcaaaa-gagggttgttgttcgtattgtatcgaaattgacaaggcgtgtccctcgcgttccacaataatagttt |
41113138 |
T |
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| Q |
93 |
caaacagttgctcggataagtgcacatcaatcaaaacacgtgcaaagaggccaaagcgcctgtgcatagtagcatcatgtataatcaaaggcgtgccaag |
192 |
Q |
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| T |
41113137 |
caaacagttgctcggataagtccacatcaatcaaaacacgtgcaaagagtccaaagcgtctgtgcatagtagcatcatctataatcagaggcgttccaag |
41113038 |
T |
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| Q |
193 |
accagaagcaatttccaagagcgttgtcttacgcc |
227 |
Q |
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| T |
41113037 |
accagaagcaatttccaaaagagttgtcttgcgcc |
41113003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 43689099 - 43688865
Alignment:
| Q |
1 |
tcatgtcctagcattttacaatgagtgcaaaaagagggtcgttgttcgtattgcaccgaga--------gcgtgtccctcgcggtccacaataacagttt |
92 |
Q |
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|||||||||||||| |||||||||| | ||||||| || |||||||| |||||| ||| | ||||||||||| || |||||||||| ||||| |
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| T |
43689099 |
tcatgtcctagcatcttacaatgagagtaaaaagacggatgttgttcgcattgcatcgaaactgacaaagcgtgtccctcccgttccacaataatagttt |
43689000 |
T |
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| Q |
93 |
caaacagttgctcggataagtgcacatcaatcaaaacacgtgcaaagaggccaaagcgcctgtgcatagtagcatcatgtataatcaaaggcgtgccaag |
192 |
Q |
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||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
43688999 |
taaatagttattcggataagtccacatcaatcaaaacacgtgcaaagaggccaaagcgcctgtgcatagtagcatcatcgataatcaaaggcgttccaag |
43688900 |
T |
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| Q |
193 |
accagaagcaatttccaagagcgttgtcttacgcc |
227 |
Q |
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|||| |||||||||||||||| |||||||| |||| |
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| T |
43688899 |
accataagcaatttccaagagagttgtcttgcgcc |
43688865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2192118 - 2191884
Alignment:
| Q |
1 |
tcatgtcctagcattttacaatgagtgcaaaaagagggtcgttgttcgtattgcaccgaga--------gcgtgtccctcgcggtccacaataacagttt |
92 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | | |||||| || || |||||||||||||||| |
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| T |
2192118 |
tcatgtcctagcattttacaatgagtgcaaaaagagggttgttgttcgtattgtaccgaaactgaaaaagtgtgtccatcccgttccacaataacagttt |
2192019 |
T |
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| Q |
93 |
caaacagttgctcggataagtgcacatcaatcaaaacacgtgcaaagaggccaaagcgcctgtgcatagtagcatcatgtataatcaaaggcgtgccaag |
192 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| ||||| |
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| T |
2192018 |
caaacagttgctcggataagcccacatcaatcaaaacacgtgcaaagagaccaaagcgcttgtgcatagtagcatcatctataatcaaaggcgttccaag |
2191919 |
T |
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| Q |
193 |
accagaagcaatttccaagagcgttgtcttacgcc |
227 |
Q |
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|||| | |||||||||||||| |||||||| |||| |
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| T |
2191918 |
accaaaggcaatttccaagagagttgtcttgcgcc |
2191884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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