View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6807_high_18 (Length: 222)
Name: NF6807_high_18
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6807_high_18 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18082707 - 18082500
Alignment:
| Q |
1 |
acttctgatttacccaccaggaatgctacaactgaaaatgttaaaagaagtttcaatggtgactcaaatccaaacaatggtactgaaattcacagtccat |
100 |
Q |
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| T |
18082707 |
acttctgatttacccaccaggaatgctacaactgaaaatgttaaa--------------tgactcaaatccaaacaatggtactgaaattcacagtccat |
18082622 |
T |
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| Q |
101 |
tgcgggttaaacgtaaaggccgccctccatcaaaaagaaaaatgtctgcaatcgaaaaagctattaagaagccaagtaaactaaccaaacagagtgatgg |
200 |
Q |
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| T |
18082621 |
tgcgggttaaacgtaaaggccgccctccatcaaaaagaaaaatgtctgcaatcgaaaaagctattaagaagccaagtaaactaaccaaacagagtgatga |
18082522 |
T |
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| Q |
201 |
cagaggaactaatctatgtttt |
222 |
Q |
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||||||||||||| |||||||| |
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| T |
18082521 |
cagaggaactaatgtatgtttt |
18082500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33358448 - 33358241
Alignment:
| Q |
1 |
acttctgatttacccaccaggaatgctacaactgaaaatgttaaaagaagtttcaatggtgactcaaatccaaacaatggtactgaaattcacagtccat |
100 |
Q |
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| T |
33358448 |
acttctgatttacccaccaggaatgctacaactgaaaatgttaaa--------------tgactcaaatccaaacaatggtactgaaattcacagtccat |
33358363 |
T |
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| Q |
101 |
tgcgggttaaacgtaaaggccgccctccatcaaaaagaaaaatgtctgcaatcgaaaaagctattaagaagccaagtaaactaaccaaacagagtgatgg |
200 |
Q |
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| T |
33358362 |
tgcgggttaaacgtaaaggccgccctccatcaaaaagaaaaatgtctgcaatcgaaaaagctattaagaagccaagtaaactaaccaaacagagtgatga |
33358263 |
T |
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| Q |
201 |
cagaggaactaatctatgtttt |
222 |
Q |
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| T |
33358262 |
cagaggaactaatgtatgtttt |
33358241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 37602540 - 37602320
Alignment:
| Q |
2 |
cttctgatttacccaccaggaatgctacaactgaaaatgttaaaagaagtttcaatggtgactcaaatccaaacaatggtactgaaattcacagtccatt |
101 |
Q |
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| T |
37602540 |
cttctgatttacccaccaggaatgctacagctgaaaatattaaaggaagtttcaatggtgactcaaatccaaacaatggtacaaaaattcacagtccatt |
37602441 |
T |
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| Q |
102 |
gcgggttaaacgtaaaggccgccctccatcaaaaagaaaaatgtctgcaatcgaaaaagctattaagaagccaagtaaactaaccaaacagagtgatggc |
201 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||| ||| | |||||| | ||||| ||||||||| | | |||||||||||||| |
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| T |
37602440 |
gcgggtaaaacgtaaaggtcgccctccatcaaaaagaaaaatatctatacatgaaaaatttgctaagaggccaagtaatcgacacaaacagagtgatgat |
37602341 |
T |
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| Q |
202 |
agaggaactaatctatgtttt |
222 |
Q |
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||||| |||||| |||||||| |
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| T |
37602340 |
agagggactaatgtatgtttt |
37602320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 38778651 - 38778732
Alignment:
| Q |
30 |
aactgaaaatgttaaaagaagtttcaatggtgactcaaatccaaacaatggtactgaaattcacagtccattgcgggttaaa |
111 |
Q |
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|||||| | |||||| |||||||||| || |||||||||||||||||| |||| || ||||||||||||| ||||||||||| |
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| T |
38778651 |
aactgacattgttaacagaagtttcattgatgactcaaatccaaacaacggtattggaattcacagtccagtgcgggttaaa |
38778732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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