View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6807_high_5 (Length: 351)
Name: NF6807_high_5
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6807_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 71 - 341
Target Start/End: Original strand, 34207966 - 34208238
Alignment:
| Q |
71 |
agaacattattaaacgaagatatcagagacatttgatatgttgcaacacgagtttgaatttgctagctattttagaacaaaaaataaataaaattgtggt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34207966 |
agaacattattaaacgaagatatcagagacatttgatatgttgcaacacgagtttgaatttgctaggtattttagaacaaaaaataaataaaattgtggt |
34208065 |
T |
|
| Q |
171 |
atggttggtggttgnnnnnnnn--ctagtactaacccattgttccagaggcgtcgctgccgccgtagaaggtggcgtgagcggtttgccatgctccgccg |
268 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34208066 |
atggttggtggttgttttttttttctagtactaacccattgttccggaggcgtcgctgccgccgtagaaggtggcgtgagcggtttgccatgctccgccg |
34208165 |
T |
|
| Q |
269 |
gagtagacaccggggagtctggcttcggttgaagtgaggagaagggctaagaaggagaaaatggtggtgatgt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34208166 |
gagtagacaccggggagtctggcttcggttgaagtgaggagaagggctaagaaggagaaaatggtggtgatgt |
34208238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University