View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6807_low_14 (Length: 313)
Name: NF6807_low_14
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6807_low_14 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 99 - 313
Target Start/End: Complemental strand, 34162858 - 34162646
Alignment:
| Q |
99 |
taatggccactttacgaaattcctacagagctttcttctcccgtctcccattttttccataatttctttctctggccgtcatgttttaactttgtaattg |
198 |
Q |
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| T |
34162858 |
taatggccactttacgaaattcctacaaagctttcttctcccgtcttccagtttttccagaatttctttctctggccgtcatgttttaacttcgtaattg |
34162759 |
T |
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| Q |
199 |
taccctagcctggattgatgaggttctttttactggtcgagtgactttgctactcaaacacaggtgcagacttacgctcaaatttgggtaggacttttac |
298 |
Q |
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| T |
34162758 |
taccctagcctggattgatgaggtt-tttttgctggtc-agtgactgtgatacttaaacacaggttcagactcacgctcaaatttgggtacgacttttac |
34162661 |
T |
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| Q |
299 |
ccttgcctcgggaat |
313 |
Q |
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| T |
34162660 |
gcttgcctcgagaat |
34162646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 41112892 - 41112999
Alignment:
| Q |
205 |
agcctggattgatgaggttctttttactggtcgagtgactttgctactcaaacacaggtgcagacttacgctcaaatttgggtaggacttttacccttgc |
304 |
Q |
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| T |
41112892 |
agcctggattgatgagctt-tttttgttggtcgagagactttgatactcaaacacaggttcaaactcacgctcagatttgggtacggcttttacgcttgc |
41112990 |
T |
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| Q |
305 |
ctcgggaat |
313 |
Q |
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| T |
41112991 |
ctcgggaat |
41112999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 52314391 - 52314498
Alignment:
| Q |
205 |
agcctggattgatgaggttctttttactggtcgagtgactttgctactcaaacacaggtgcagacttacgctcaaatttgggtaggacttttacccttgc |
304 |
Q |
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| T |
52314391 |
agcctggattgataaggtt-tttttgttggtcgagtgactttgatactcaaacacaggttcagactcatgcccagatttgggtacgacttttacgcttgc |
52314489 |
T |
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| Q |
305 |
ctcgggaat |
313 |
Q |
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| T |
52314490 |
ctcaggaat |
52314498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 305
Target Start/End: Original strand, 43688757 - 43688853
Alignment:
| Q |
208 |
ctggattgatgaggttctttttactggtcgagtgactttgctactcaaacacaggtgcagacttacgctcaaatttgggtaggacttttacccttgcc |
305 |
Q |
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| T |
43688757 |
ctgggttgataaggtt-tttttgctggtcgagtgactttgatactcaaacacaggttcagactcatgcttagatttgggtacgacttttacgcttgcc |
43688853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 2191774 - 2191880
Alignment:
| Q |
207 |
cctggattgatgaggttctttttactggtcgagtgactttgctactcaaacacaggtgcagacttacgctcaaatttgggtaggacttttacccttgcct |
306 |
Q |
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||||| |||||||| || ||| | |||| |||||||||||| ||||||| |||| || | |||| |||| || ||||||||| | |||||| ||||||| |
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| T |
2191774 |
cctggcttgatgagtttttttctgctggacgagtgactttgatactcaatcacaagttccgactcacgcccagatttgggtaaggtttttacgcttgcct |
2191873 |
T |
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| Q |
307 |
cgggaat |
313 |
Q |
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| T |
2191874 |
caggaat |
2191880 |
T |
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