View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6807_low_29 (Length: 221)
Name: NF6807_low_29
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6807_low_29 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18082198 - 18082418
Alignment:
| Q |
1 |
acaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagtttttgtccaaaaaatattagagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18082198 |
acaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagcttttgtccaaaaaatattagagt |
18082297 |
T |
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| Q |
101 |
tgtccatactagttaactatcattgtacttgcatctagcaaatttccaccacttacaacatcaacatatggtttaatgcagatgttgctgtcaaactgat |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
18082298 |
tgtccatactagttaactaccattgtacttgcatctagcaaatttccaccacttacaacatcaacatatggttcaatgtagatgttgctgtcaaactgat |
18082397 |
T |
|
| Q |
201 |
ttgtcactctttgagaattgt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
18082398 |
ttgtcactctttgagaattgt |
18082418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33357939 - 33358159
Alignment:
| Q |
1 |
acaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagtttttgtccaaaaaatattagagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33357939 |
acaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagcttttgtccaaaaaatattagagt |
33358038 |
T |
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| Q |
101 |
tgtccatactagttaactatcattgtacttgcatctagcaaatttccaccacttacaacatcaacatatggtttaatgcagatgttgctgtcaaactgat |
200 |
Q |
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| T |
33358039 |
tgtccatactagttaactaccattgtacttgcatctagcaaatttccaccacttacaacatcaacatatggttcaatgtagatgttgctgtcaaactgat |
33358138 |
T |
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| Q |
201 |
ttgtcactctttgagaattgt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33358139 |
ttgtcactctttgagaattgt |
33358159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 37602021 - 37602231
Alignment:
| Q |
1 |
acaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagtttttgtccaaaaaatattagagt |
100 |
Q |
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|||||||||| |||||| |||||| |||||||||||| ||| || |||||||| | |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37602021 |
acaatatcatagttataaaagtctggttatatacaca-aaagggtcacttcatatacttagcaatgagtgcattagcttttgtccaaaaaatattagagc |
37602119 |
T |
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| Q |
101 |
tgtccatactagttaactatcattgtacttgcatctagcaaatttccaccacttacaacatcaacatatggtttaatgcagatgttgctgtcaaactgat |
200 |
Q |
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||||||| ||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
37602120 |
tgtccatgctagttaactatcattgtacttgcatccagcacatttccaccactaacaacatcaagagatgatttaatgcagatgttgctgtcaaactgat |
37602219 |
T |
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| Q |
201 |
ttgtcactcttt |
212 |
Q |
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|||||||||||| |
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| T |
37602220 |
ttgtcactcttt |
37602231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 5744309 - 5744179
Alignment:
| Q |
24 |
ttgttatatacacacaaaagg-ccacttcatcttcttagcaatgagtgcattagtttttgtccaaaaaatattagagttgtccatactagttaactatca |
122 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| || |
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| T |
5744309 |
ttgttatatacacacaaaagggccacttcatctttttagcaatgagtgcattagcttttgtccaaaaaatattagagctgttcatactagttaactacca |
5744210 |
T |
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| Q |
123 |
ttgtacttgcatctagcaaatttccaccact |
153 |
Q |
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| T |
5744209 |
ttgtacttgcatctagcaaatctccaccact |
5744179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 27659739 - 27659634
Alignment:
| Q |
1 |
acaatatcattgttatataagtcttgttatatacacacaaaaggccacttcatcttcttagcaatgagtgcattagtttttgtccaaaaaatattagagt |
100 |
Q |
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|||||||||| |||||| |||||| ||| |||||||| ||| || |||||||||| ||||||||||||||||| | ||||||||||||| |||||||| |
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| T |
27659739 |
acaatatcatagttataaaagtctggttgtatacaca-aaagggtcacttcatctacttagcaatgagtgcatgtgcttttgtccaaaaactattagagc |
27659641 |
T |
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| Q |
101 |
tgtccat |
107 |
Q |
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||||||| |
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| T |
27659640 |
tgtccat |
27659634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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