View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6807_low_3 (Length: 552)
Name: NF6807_low_3
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6807_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 215 - 543
Target Start/End: Original strand, 12171101 - 12171428
Alignment:
| Q |
215 |
tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg |
311 |
Q |
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| T |
12171101 |
tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- |
12171196 |
T |
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| Q |
312 |
tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca |
411 |
Q |
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| T |
12171197 |
--tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca |
12171294 |
T |
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| Q |
412 |
actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt |
509 |
Q |
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| T |
12171295 |
actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt |
12171394 |
T |
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| Q |
510 |
gttttcactggtgattctttcctatgatgtccat |
543 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
12171395 |
attttcactggtgattatttcctatgatgtccat |
12171428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 215 - 543
Target Start/End: Original strand, 12415529 - 12415856
Alignment:
| Q |
215 |
tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg |
311 |
Q |
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|||||||||| |||||||||||| | |||||||||| |||||||||||||||||| |||||||| ||||||||| ||| |||| || || |||| ||| |
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| T |
12415529 |
tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- |
12415624 |
T |
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| Q |
312 |
tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca |
411 |
Q |
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| T |
12415625 |
--tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca |
12415722 |
T |
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| Q |
412 |
actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt |
509 |
Q |
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|||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12415723 |
actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt |
12415822 |
T |
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| Q |
510 |
gttttcactggtgattctttcctatgatgtccat |
543 |
Q |
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| T |
12415823 |
attttcactggtgattatttcctatgatgtccat |
12415856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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