View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6807_low_30 (Length: 218)

Name: NF6807_low_30
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6807_low_30
NF6807_low_30
[»] chr1 (14 HSPs)
chr1 (1-218)||(47758440-47758657)
chr1 (9-215)||(47716301-47716507)
chr1 (3-215)||(47711544-47711756)
chr1 (1-215)||(47744057-47744271)
chr1 (5-155)||(47701294-47701444)
chr1 (70-215)||(6497779-6497924)
chr1 (11-218)||(6525233-6525440)
chr1 (13-202)||(47774831-47775020)
chr1 (76-215)||(6510739-6510878)
chr1 (13-205)||(47770938-47771130)
chr1 (70-213)||(6515123-6515266)
chr1 (76-154)||(47607328-47607406)
chr1 (76-185)||(47287582-47287691)
chr1 (76-106)||(47593111-47593141)
[»] chr8 (2 HSPs)
chr8 (1-215)||(11224757-11224971)
chr8 (76-106)||(23189687-23189717)
[»] chr5 (5 HSPs)
chr5 (2-215)||(28859955-28860168)
chr5 (12-215)||(28828946-28829149)
chr5 (13-204)||(27368599-27368790)
chr5 (9-215)||(28854604-28854810)
chr5 (2-215)||(28874525-28874738)
[»] scaffold0341 (1 HSPs)
scaffold0341 (76-215)||(12419-12558)
[»] chr4 (1 HSPs)
chr4 (72-110)||(31697176-31697214)
[»] scaffold0007 (1 HSPs)
scaffold0007 (82-154)||(7162-7234)
[»] chr6 (3 HSPs)
chr6 (82-154)||(18991047-18991119)
chr6 (82-154)||(21968265-21968337)
chr6 (82-154)||(22086149-22086221)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 47758440 - 47758657
Alignment:
Q  1 tcatattctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47758440 tcatattctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttag 47758539  T
Q  101 gattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47758540 gattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaat 47758639  T
Q  201 acctccaatgattttata 218  Q
    ||||||||||||||||||    
T  47758640 acctccaatgattttata 47758657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 47716301 - 47716507
Alignment:
Q  9 taatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| || ||||||||||||||||||||||||||     
T  47716301 taatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcgataccaaaatctgatattttaggattcaat 47716400  T
Q  109 ttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaa 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  47716401 ttttcgtctaagagaatgttacccgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaaggcctctagcaatacctccaa 47716500  T
Q  209 tgatttt 215  Q
    |||||||    
T  47716501 tgatttt 47716507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 47711544 - 47711756
Alignment:
Q  3 atattctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttagga 102  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||| || ||||| |||||||||||||||    
T  47711544 atattctgatacttactatgttccaacgattttatttgtatttacttgagtttgatcgataagaagtagtctggctatgccaaagtctgatattttagga 47711643  T
Q  103 ttcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatac 202  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  47711644 ttcaacttttcatccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctcatgaaggtaaagaaggcctctagctatac 47711743  T
Q  203 ctccaatgatttt 215  Q
    |||||||||||||    
T  47711744 ctccaatgatttt 47711756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 47744057 - 47744271
Alignment:
Q  1 tcatattctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||| || |||||||| ||||||||||    
T  47744057 tcatattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttag 47744156  T
Q  101 gattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaat 200  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| |||||    
T  47744157 gattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaat 47744256  T
Q  201 acctccaatgatttt 215  Q
     ||||||||||||||    
T  47744257 tcctccaatgatttt 47744271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 47701294 - 47701444
Alignment:
Q  5 attctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggatt 104  Q
    |||| |||||||||||||| ||||||| ||||| ||||||||||||||||| ||| |||||||  || |||||||| |||||||||||||||||||||||    
T  47701294 attcaaatacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaagaattagcctggccataccaaaatctgatattttaggatt 47701393  T
Q  105 caacttttcgtctaagagaatgttactcgctttaagatcacgatgtataat 155  Q
    ||  ||||| || |||||||||||||| |||||||||||||||||||||||    
T  47701394 cattttttcatccaagagaatgttacttgctttaagatcacgatgtataat 47701444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 6497779 - 6497924
Alignment:
Q  70 agtctggccattccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaat 169  Q
    ||||| ||||| |||||||| ||||| ||||||||||  | ||| ||||||||||||||||| ||||| ||||||||||| ||||| || ||| ||||||    
T  6497779 agtcttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgctttgagatcacgatgaataatgcgcagtcgagaat 6497878  T
Q  170 cctcgtgaaggtaaagaaggcctctagcaatacctccaatgatttt 215  Q
    |||||||||||||||||| ||||| ||||||||||  |||||||||    
T  6497879 cctcgtgaaggtaaagaatgcctcgagcaatacctaaaatgatttt 6497924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 6525440 - 6525233
Alignment:
Q  11 atacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaactt 110  Q
    |||||||||| ||||| || ||| | ||||||||| | |||||||  || |||  ||  ||||| ||||| |||||||||| ||| |||||||||| ||     
T  6525440 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 6525341  T
Q  111 ttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaatg 210  Q
    ||| ||||||||||| || || ||||| ||||||||||| |||||||| ||  |||||||||| |||||||||||||  |||| |||| ||||| |||||    
T  6525340 ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatg 6525241  T
Q  211 attttata 218  Q
    ||||||||    
T  6525240 attttata 6525233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 47775020 - 47774831
Alignment:
Q  13 acttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaactttt 112  Q
    |||||||| |||||||| |||||| |||||||| ||||||||| ||||| || ||  | ||| |||| ||||||||| |||||||||||||||| |   |    
T  47775020 acttactaggttccaacaattttacttgtatttccttgagtttgatcaataacaaacaatctcgccaatccaaaatcggatattttaggattcatcccgt 47774921  T
Q  113 cgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatac 202  Q
    ||||||||||||| || || ||||| |||||||| |||||||| || ||  |||||||||| ||||| |||| ||| |||| | ||||||    
T  47774920 cgtctaagagaatattgctagctttgagatcacggtgtataatgcggaggcgagaatcctcatgaagataaataagacctcgaacaatac 47774831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 6510739 - 6510878
Alignment:
Q  76 gccattccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgt 175  Q
    ||||| |||||||| | ||| |||||||||| || ||| || |||||||| || || ||||| ||||||||||| |||| ||| ||| ||||||||||||    
T  6510739 gccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgt 6510838  T
Q  176 gaaggtaaagaaggcctctagcaatacctccaatgatttt 215  Q
    |||||||||||| ||||| ||||||||||  |||||||||    
T  6510839 gaaggtaaagaatgcctcgagcaatacctaaaatgatttt 6510878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 47771130 - 47770938
Alignment:
Q  13 acttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaactttt 112  Q
    |||||||| |||||||| |||| || ||||||| ||| || || ||| | || ||  | ||| |||| ||||||||| ||||| |||||||||| ||  |    
T  47771130 acttactaagttccaacaatttgatctgtatttccttcagattgatctataacaaacaatcttgccaatccaaaatcagatatcttaggattcatctcat 47771031  T
Q  113 cgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctc 205  Q
    |||||||||||||||| || ||||| | |||||| |||||||| || ||  |||||||||| ||||| |||||||| |||| | |||||||||    
T  47771030 cgtctaagagaatgttgcttgctttgatatcacggtgtataattcgtaggcgagaatcctcatgaagataaagaagacctcgaacaatacctc 47770938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 213
Target Start/End: Original strand, 6515123 - 6515266
Alignment:
Q  70 agtctggccattccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaat 169  Q
    ||||| ||||| |||||||| | ||| |||||||||| |  ||  ||||||||||| || || ||||| ||||||||||| |||| ||| | | ||||||    
T  6515123 agtcttgccatgccaaaatcagctatcttaggattcatccgtttatctaagagaatattgcttgctttgagatcacgatgaataacacgcactcgagaat 6515222  T
Q  170 cctcgtgaaggtaaagaaggcctctagcaatacctccaatgatt 213  Q
    |||| || |||||||||| ||||| ||||||||||  |||||||    
T  6515223 cctcatggaggtaaagaatgcctcgagcaatacctaaaatgatt 6515266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 47607406 - 47607328
Alignment:
Q  76 gccattccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataa 154  Q
    ||||| ||||||||||| |||||||||||||  | ||| ||||| | ||| ||||| | ||||||||||||||||||||    
T  47607406 gccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataa 47607328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 47287691 - 47287582
Alignment:
Q  76 gccattccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgt 175  Q
    ||||| ||||||||||| ||||| ||||| || || || ||||| |  || ||||| ||||||||||| |||||||| || | |||| ||||||| ||||    
T  47287691 gccatcccaaaatctgaaattttgggatttaaattctcatctaataatatattactagctttaagatcgcgatgtatgattctaagtcgagaatcttcgt 47287592  T
Q  176 gaaggtaaag 185  Q
    |||| |||||    
T  47287591 gaagataaag 47287582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 47593141 - 47593111
Alignment:
Q  76 gccattccaaaatctgatattttaggattca 106  Q
    |||||||||||||||||||||||||||||||    
T  47593141 gccattccaaaatctgatattttaggattca 47593111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11224971 - 11224757
Alignment:
Q  1 tcatattctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||| || |||||||| ||||||||||    
T  11224971 tcatattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttag 11224872  T
Q  101 gattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaat 200  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| |||||    
T  11224871 gattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaat 11224772  T
Q  201 acctccaatgatttt 215  Q
     ||||||||||||||    
T  11224771 tcctccaatgatttt 11224757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 23189717 - 23189687
Alignment:
Q  76 gccattccaaaatctgatattttaggattca 106  Q
    |||||||||||||||||||||||||||||||    
T  23189717 gccattccaaaatctgatattttaggattca 23189687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 28859955 - 28860168
Alignment:
Q  2 catattctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttagg 101  Q
    |||| ||||| |||||||| |||||||| | | || |||||||| |||| |||| ||| |  ||||  ||||| ||||| ||||||||||| || ||||     
T  28859955 cataatctaacacttactaggttccaacaactctacttgtatttgcttgggtttgatccaatagaattagtcttgccatgccaaaatctgaaatcttagc 28860054  T
Q  102 attcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaata 201  Q
    |||||  | |||||||| ||||||||| || ||||| ||||| || ||||||||||| ||| |||||||||| ||||||||||||| ||||| |||||||    
T  28860055 attcatgtcttcgtctaggagaatgttgcttgctttgagatcgcggtgtataatacgcagtcgagaatcctcatgaaggtaaagaacgcctcgagcaata 28860154  T
Q  202 cctccaatgatttt 215  Q
    |||  |||||||||    
T  28860155 ccttgaatgatttt 28860168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 28828946 - 28829149
Alignment:
Q  12 tacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaacttt 111  Q
    ||||||||| |||||||| ||| || |||||||| |||| |||| ||| |||||||  ||||| ||||| |||||||||| ||| |||| |||||  | |    
T  28828946 tacttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcatgtct 28829045  T
Q  112 tcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaatga 211  Q
     | |||||||||||||| || |||||||||||||| |||||||| || ||| ||||||| || ||||| |||||||  |||| || |||||||  |||||    
T  28829046 ccatctaagagaatgttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaagataaagaacacctcgagtaataccttgaatga 28829145  T
Q  212 tttt 215  Q
    ||||    
T  28829146 tttt 28829149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 27368599 - 27368790
Alignment:
Q  13 acttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaactttt 112  Q
    |||||||| |||||||||||| |||||||| || ||| ||||| | | | || ||   |||| |||| ||||||||| ||||| |||||||||| || ||    
T  27368599 acttactaggttccaacgattctatttgtacttccttcagtttgaccgataacaaatcgtcttgccaatccaaaatcggatatcttaggattcatctctt 27368698  T
Q  113 cgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacct 204  Q
    ||||||| ||||| || || ||||| |||||||| |||||||| || |   |||||||||||||||| |||||||| |||| ||||||||||    
T  27368699 cgtctaaaagaatattgcttgctttgagatcacggtgtataatgcgcaagcgagaatcctcgtgaagataaagaagacctcgagcaatacct 27368790  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 28854604 - 28854810
Alignment:
Q  9 taatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaac 108  Q
    |||||||||||| |||||||| |   || |||||||| |||| |||| ||| |||||||  ||||| ||||| || ||||||||||| |||| |||||      
T  28854604 taatacttactaagttccaacaacactacttgtattttcttgtgtttgatccacaagaattagtcttgccatgccgaaatctgatatcttagcattcatg 28854703  T
Q  109 ttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaa 208  Q
    ||||| ||||||||||| || |  ||||| |||||||| |||||||| || ||| |||||||||| ||||| || ||||  |||| ||||||||||  ||    
T  28854704 ttttcatctaagagaatattgcctgctttgagatcacggtgtataatgcgtagtcgagaatcctcatgaagatagagaacacctcgagcaatacctttaa 28854803  T
Q  209 tgatttt 215  Q
    |||||||    
T  28854804 tgatttt 28854810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 28874525 - 28874738
Alignment:
Q  2 catattctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttagg 101  Q
    |||| ||||| |||||||| ||| |||| | | || |||||||| |||| |||| ||| |||||||  ||||| ||||| ||||||||||| || ||||     
T  28874525 cataatctaacacttactaggtttcaacaactctacttgtatttgcttgggtttgatccacaagaataagtcttgccatgccaaaatctgagatcttagc 28874624  T
Q  102 attcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaata 201  Q
    |||||  | |||||||||||||||||| || ||||| ||||| || ||||||||||| |||   |||||| | ||||| ||||||| ||||| ||||||     
T  28874625 attcacgtcttcgtctaagagaatgttgcttgctttgagatcgcggtgtataatacgcagtcttgaatccccatgaagataaagaacgcctcgagcaatg 28874724  T
Q  202 cctccaatgatttt 215  Q
    |||  |||||||||    
T  28874725 ccttgaatgatttt 28874738  T

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Target: scaffold0341 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 12419 - 12558
Alignment:
Q  76 gccattccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgt 175  Q
    ||||| |||||||| | ||| |||||||||| || ||| || |||||||| || || ||||| ||||||||||| |||| ||| ||| ||||||||||||    
T  12419 gccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgt 12518  T
Q  176 gaaggtaaagaaggcctctagcaatacctccaatgatttt 215  Q
    |||||||||||| ||||| ||||||||||  |||||||||    
T  12519 gaaggtaaagaatgcctcgagcaatacctaaaatgatttt 12558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 31697214 - 31697176
Alignment:
Q  72 tctggccattccaaaatctgatattttaggattcaactt 110  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  31697214 tctggccattccaaaatctgatatttttggattcaactt 31697176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 7234 - 7162
Alignment:
Q  82 ccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataa 154  Q
    ||||||||||| ||||||||| |||  ||||||||||| ||||| || || | ||| ||||| ||||||||||    
T  7234 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataa 7162  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 18991047 - 18991119
Alignment:
Q  82 ccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataa 154  Q
    ||||||||||| ||||||||| |||  ||||||||||| ||||| || || | ||| ||||| ||||||||||    
T  18991047 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataa 18991119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 21968265 - 21968337
Alignment:
Q  82 ccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataa 154  Q
    ||||||||||| ||||||||| |||  ||||| ||||| ||||| ||||| | ||| ||||| ||||||||||    
T  21968265 ccaaaatctgaaattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataa 21968337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 22086149 - 22086221
Alignment:
Q  82 ccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataa 154  Q
    ||||||||||| ||| ||||| |||  ||||| ||||| ||||| ||||| | ||| ||||||||||||||||    
T  22086149 ccaaaatctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataa 22086221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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