View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6807_low_5 (Length: 428)
Name: NF6807_low_5
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6807_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 47894575 - 47894150
Alignment:
| Q |
17 |
attaagaaaacagatacagagacaccaaaaagccatactcctcaacaatgcacagagagctgttttatttctttttgcatcattcaactatacaaagtaa |
116 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894575 |
attaagaaaacagatatagagacaccaaaatgccatactcctcaacaatgcacagagagctgttttatttctttttgcatcattcaactatacaaagtaa |
47894476 |
T |
|
| Q |
117 |
aatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacagggaccgaaacaacaccatcgtttgagttcaacctacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894475 |
aatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacagggaccgaaacaacaccatcgtttgagttcaacctacc |
47894376 |
T |
|
| Q |
217 |
aaatttcgcatagattttggctctaagatctcttcctgattccaccctctccataccaaccccttcatagtttgatggaagactcaaaaaaccacctcgt |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894375 |
aaatttctcatagattttggctctaagatctcttcctgattccaccctctccataccaaccccttcatagtttgatggaagactcaaaaaaccacctcgt |
47894276 |
T |
|
| Q |
317 |
gg------------------agaacccatcttagacaccggactccattcatcaaccctaacactcctcatgaagccaactaattccctcacgttcaccg |
398 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894275 |
ggtcgtggagaaccaaacacagaacccatcttagacaccggactccattcatcaaccctaacactcctcatgaagccaactaattccctcacgttcaccg |
47894176 |
T |
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| Q |
399 |
gtgggacaccgtatcgagatattctt |
424 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
47894175 |
gtgggacaccgtatcgagattttctt |
47894150 |
T |
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