View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6807_low_6 (Length: 424)

Name: NF6807_low_6
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6807_low_6
NF6807_low_6
[»] chr1 (6 HSPs)
chr1 (1-406)||(4197141-4197545)
chr1 (333-379)||(10280754-10280800)
chr1 (352-381)||(11893510-11893539)
chr1 (333-373)||(23402136-23402176)
chr1 (333-377)||(24460322-24460366)
chr1 (341-377)||(30598198-30598234)
[»] chr4 (4 HSPs)
chr4 (333-379)||(47146049-47146095)
chr4 (333-377)||(29376008-29376052)
chr4 (333-376)||(46860023-46860066)
chr4 (333-377)||(28259378-28259422)
[»] chr8 (7 HSPs)
chr8 (334-373)||(27465457-27465496)
chr8 (333-377)||(4560607-4560651)
chr8 (333-377)||(10437988-10438032)
chr8 (333-377)||(14926903-14926947)
chr8 (333-373)||(39881646-39881686)
chr8 (333-377)||(43043773-43043817)
chr8 (337-377)||(4764003-4764043)
[»] chr5 (4 HSPs)
chr5 (333-377)||(17368777-17368821)
chr5 (333-379)||(10771807-10771853)
chr5 (333-377)||(13508545-13508589)
chr5 (333-377)||(17369308-17369352)
[»] chr3 (6 HSPs)
chr3 (337-377)||(1288770-1288810)
chr3 (339-377)||(2081004-2081042)
chr3 (333-377)||(20685680-20685724)
chr3 (333-377)||(25459551-25459595)
chr3 (332-368)||(25925833-25925869)
chr3 (333-377)||(51929846-51929890)
[»] chr2 (9 HSPs)
chr2 (333-377)||(14844902-14844946)
chr2 (335-377)||(750841-750883)
chr2 (333-377)||(8017539-8017583)
chr2 (333-377)||(15370244-15370288)
chr2 (333-377)||(22878203-22878247)
chr2 (333-377)||(28810373-28810417)
chr2 (333-377)||(37518746-37518790)
chr2 (333-377)||(40759265-40759309)
chr2 (333-377)||(43259940-43259984)
[»] chr7 (2 HSPs)
chr7 (335-377)||(1418526-1418568)
chr7 (333-377)||(7513664-7513708)
[»] chr6 (1 HSPs)
chr6 (334-379)||(12111073-12111118)
[»] scaffold0147 (1 HSPs)
scaffold0147 (333-373)||(12641-12681)


Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 4197545 - 4197141
Alignment:
Q  1 cttactgcatgacaaattggtacagaagcagttttggaagtaaccattgctagatctgacagaggatacattactggctacatattttatggttattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4197545 cttactgcatgacaaattggtacagaagcagttttggaagtaaccattgctagatctgacagagg-tacattactggctacatattttatggttattttg 4197447  T
Q  101 ttttctacagcccataacaagcacttggattgggaccataataatgcaaaaccaacacaaaccaacaaaaacctcccatcagcaatatgtaagttaagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4197446 ttttctacagcccataacaagcacttggattgggaccataataatgcaaaaccaacacaaaccaacaaaaacctcccatcagcaatatgtaagttaagaa 4197347  T
Q  201 gtgaggcttctttcagtttaaacttaaattgacaattgcataagtctgctaaaaagaatcaataaaccatgcaagttaagagagtgcaccttcctaacaa 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4197346 gtgaagcttctttcagtttaaacttaaattgacaattgcataagtctgctaaaaagaatcaataaaccatgcaagttaagagagtgcaccttcctaacaa 4197247  T
Q  301 gaaaactaaaaattagtaaacctgtgtacagtacaagtgcttatgccaattgataagttcaaataagtcaatccaaatataactgaacacatatagtcta 400  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4197246 gaaaactaaaaattagtaaacatgtgtacagtacaagtgcttatgccaattgataagttcaaataagtcaatccaaatagaactgaacacatatagtcta 4197147  T
Q  401 cgaagg 406  Q
    ||||||    
T  4197146 cgaagg 4197141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 10280754 - 10280800
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaata 379  Q
    |||| ||||||||||||| |||| ||||||||||||||||| |||||    
T  10280754 acaattgcttatgccaatagataggttcaaataagtcaatctaaata 10280800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 381
Target Start/End: Complemental strand, 11893539 - 11893510
Alignment:
Q  352 gataagttcaaataagtcaatccaaatata 381  Q
    ||||||||||||||||||||||||||||||    
T  11893539 gataagttcaaataagtcaatccaaatata 11893510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 23402136 - 23402176
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatc 373  Q
    |||||||||||  ||||| ||||||||||||||||||||||    
T  23402136 acaagtgcttacaccaatagataagttcaaataagtcaatc 23402176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 24460366 - 24460322
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||||| ||| || | ||||||||||||||||||||||||||    
T  24460366 acaagtgctcatgtcagtagataagttcaaataagtcaatccaaa 24460322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 30598234 - 30598198
Alignment:
Q  341 ttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  30598234 ttataccaatagataagttcaaataagtcaatccaaa 30598198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 47146049 - 47146095
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaata 379  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||    
T  47146049 acaagtgcttatgccaatatataagttcaaataagtcaatccaaata 47146095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 29376008 - 29376052
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||    
T  29376008 acaagtgcttatgtcaatagataagttcaaataagccaatccaaa 29376052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 46860023 - 46860066
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaa 376  Q
    |||||||||||||  ||| |||||||||||||||||||||||||    
T  46860023 acaagtgcttatgtgaatagataagttcaaataagtcaatccaa 46860066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 28259378 - 28259422
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||||||||| || |||||||| |||||||||||| ||||||    
T  28259378 acaagtgcttatgtcagttgataagctcaaataagtcagtccaaa 28259422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 373
Target Start/End: Original strand, 27465457 - 27465496
Alignment:
Q  334 caagtgcttatgccaattgataagttcaaataagtcaatc 373  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  27465457 caagtgcttatgccaatagataagttcaaataagtcaatc 27465496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 4560607 - 4560651
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||    
T  4560607 acaagtgcttatgtcaatagataagctcaaataagtcaatccaaa 4560651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 10437988 - 10438032
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||    
T  10437988 acaagtgattatgccattggataagttcaaataagtcaatccaaa 10438032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 14926947 - 14926903
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||||||||| |  |||||||||||||||||||||||||    
T  14926947 acaagtgcttatgccagtaaataagttcaaataagtcaatccaaa 14926903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 39881686 - 39881646
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatc 373  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  39881686 acaagtgtttatgccaatagataagttcaaataagtcaatc 39881646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 43043773 - 43043817
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||    
T  43043773 acaagtgcttatgccagttgataagctcaaacaagtcaatccaaa 43043817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 4764003 - 4764043
Alignment:
Q  337 gtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||| | | ||||||||||||||||||||||||||    
T  4764003 gtgcttatgctagtggataagttcaaataagtcaatccaaa 4764043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 17368777 - 17368821
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||||||||| | |||||||| |||||||||||||||||    
T  17368777 acaagtgcttatgccagtagataagtttaaataagtcaatccaaa 17368821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 10771853 - 10771807
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaata 379  Q
    |||||||||||||||| | |||||| ||||||||| |||||||||||    
T  10771853 acaagtgcttatgccagtagataagctcaaataagccaatccaaata 10771807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 13508545 - 13508589
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||| |||||||| | |||||||||||||||||||| |||||    
T  13508545 acaagtgtttatgccagtagataagttcaaataagtcaagccaaa 13508589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 17369308 - 17369352
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||| ||||| || | ||||||||||||||||||||||||||    
T  17369308 acaagtgattatgtcagtagataagttcaaataagtcaatccaaa 17369352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 1288810 - 1288770
Alignment:
Q  337 gtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  1288810 gtgcttatgccagttgataagctcaaataagtcaatccaaa 1288770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 2081042 - 2081004
Alignment:
Q  339 gcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  2081042 gcttatgtcaatagataagttcaaataagtcaatccaaa 2081004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 20685680 - 20685724
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||||||||||| |||||  ||||||||||||| |||||    
T  20685680 acaagtgcttatgccaatagataaactcaaataagtcaagccaaa 20685724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 25459595 - 25459551
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||||||| | |||||||| |||||||| ||||||||||    
T  25459595 acaagtgcttatgctagttgataagctcaaataaatcaatccaaa 25459551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 25925833 - 25925869
Alignment:
Q  332 tacaagtgcttatgccaattgataagttcaaataagt 368  Q
    ||||||||||||||||| | |||||||||||||||||    
T  25925833 tacaagtgcttatgccagtagataagttcaaataagt 25925869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 51929846 - 51929890
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||| |||||| ||| |||||| |||||||||||||||||||    
T  51929846 acaagtgtttatgctaatagataagctcaaataagtcaatccaaa 51929890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 14844946 - 14844902
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||    
T  14844946 acaagtgcttatgccaatagataacttcaaataagtcaacccaaa 14844902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 750841 - 750883
Alignment:
Q  335 aagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||| ||||| |||||| |||||||||||||||||||    
T  750841 aagtgcttataccaatagataagctcaaataagtcaatccaaa 750883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 8017539 - 8017583
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||||||||| |||| |||||  |||||||||||||||||||    
T  8017539 acaagtgcttatgtcaatagataacctcaaataagtcaatccaaa 8017583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 15370288 - 15370244
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||| ||||||||||| | |||||| |||||||||||||||||||    
T  15370288 acaaatgcttatgccagtagataagctcaaataagtcaatccaaa 15370244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 22878203 - 22878247
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||||||||| || | |||||| |||||||||||||||||||    
T  22878203 acaagtgcttatgtcagtggataagctcaaataagtcaatccaaa 22878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 28810417 - 28810373
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||| |||||||||| || ||| |||||||||||||||||||    
T  28810417 acaagtgtttatgccaatagagaagctcaaataagtcaatccaaa 28810373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 37518790 - 37518746
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||||||||||| || ||||| |||||||||||||| |||||    
T  37518790 acaagtgcttatgccgatagataacttcaaataagtcaacccaaa 37518746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 40759265 - 40759309
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    ||||||||||||| |||| |||||| ||||||||| |||||||||    
T  40759265 acaagtgcttatgtcaatagataagctcaaataaggcaatccaaa 40759309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 43259940 - 43259984
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||||||| | | |||||||||||||||| |||||||||    
T  43259940 acaagtgcttatgctagtagataagttcaaataagccaatccaaa 43259984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 1418526 - 1418568
Alignment:
Q  335 aagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||||||| | |||||| |||||||||||||||||||    
T  1418526 aagtgcttatgccagtagataagctcaaataagtcaatccaaa 1418568  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 7513664 - 7513708
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatccaaa 377  Q
    |||||||||||||||| | |||||| |||||||||||||| ||||    
T  7513664 acaagtgcttatgccagtagataagctcaaataagtcaattcaaa 7513708  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 12111073 - 12111118
Alignment:
Q  334 caagtgcttatgccaattgataagttcaaataagtcaatccaaata 379  Q
    ||||||||||||| | | |||||| |||||||||||||||||||||    
T  12111073 caagtgcttatgctagtagataagctcaaataagtcaatccaaata 12111118  T

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Target: scaffold0147 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 12681 - 12641
Alignment:
Q  333 acaagtgcttatgccaattgataagttcaaataagtcaatc 373  Q
    |||||||||||||| | | ||||||||||||||||||||||    
T  12681 acaagtgcttatgctagtggataagttcaaataagtcaatc 12641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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