View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6807_low_7 (Length: 407)
Name: NF6807_low_7
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6807_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 403
Target Start/End: Original strand, 39298362 - 39298745
Alignment:
| Q |
6 |
actttctctccaacatttcccacagtttcaccaatgcttgacatcacattgcttcccctccccttctcttgataattagtaccttgtgcttgagttcttt |
105 |
Q |
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| T |
39298362 |
actttctctccaacatttcccacagtttcaccaatgcttgacatcacattgcttcccctccccttctcttgataattagtaccttgtgcttgagttcttt |
39298461 |
T |
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| Q |
106 |
ccccagttggcatcattttttgagaatagttgctcacattttcgccgatacctccggatgatggcatgatctcttcaccttcctaaaatcaaaccaaaat |
205 |
Q |
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| T |
39298462 |
ccccagttggcatcattttttgagaatagttgctcacattttcgccgatacctcctgatgatggcatgatctcttcaccttcctaaaa------------ |
39298549 |
T |
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| Q |
206 |
tttcattgtattcagtcattatcaagtatcatgtcatttataccagttgaatcaaacttaactaaacatttgattatgaaaagtaaacatgatgataaaa |
305 |
Q |
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| T |
39298550 |
--tcagtgtattcagtcattatcaagtatcatgtcatttataccagttgaatcaaacttaattaaacatttgattatgaaaagtaaacatgatgataaaa |
39298647 |
T |
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| Q |
306 |
aagaaatagtctaataaaagttatgaatgtatagaacagaacctgaagttgaccagaagcccttttggtctcatagtcacgccatgattcagctttct |
403 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| |
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| T |
39298648 |
aagaaatagtctaataaaagtgatgaatgtatagaacagaacctgaagttgaccagaagcccttttagtctcatattcacgccatgattcatctttct |
39298745 |
T |
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