View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6807_low_8 (Length: 401)
Name: NF6807_low_8
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6807_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 225 - 354
Target Start/End: Original strand, 2218914 - 2219043
Alignment:
| Q |
225 |
caatactttagcaatgtaacataaaccaaatgtaatgaactatgtagatccaaaacaaaagaatgaaaaaggcgagatcttaagacaattcgatagctaa |
324 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2218914 |
caatactttagcaatgtaacataagccaaatgtaatgaactatgtagatccaaaacaaaagaatgaaaaaggcgagatcttaagacaattcgatagctaa |
2219013 |
T |
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| Q |
325 |
gaaacaagaaaacgatgaaacgaaaggata |
354 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
2219014 |
gaaacaagaaaacaatgaaacgaaaggata |
2219043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 2218697 - 2218857
Alignment:
| Q |
16 |
atcactatatagacaacggcaaaacaacaatacacccacatttcaatcttggtggnnnnnnnnnnnntcaatctttttactccaatcttcatcttagata |
115 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
2218697 |
atcactatacagacaacggtaaaacaacaatacacccacatttcaatcttggtggaaaaaaaaaa--tcaatctttttaccccaatcttcatcttagata |
2218794 |
T |
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| Q |
116 |
aaaacccaaatctaaaaatacaatttttctctacaaaaagtaaaacccattttccagttacaa |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2218795 |
aaaacccaaatctaaaaatacaatttttctctacaaaaagtaaaacccattttccagttacaa |
2218857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 2226299 - 2226385
Alignment:
| Q |
83 |
tcaatctttttactccaatcttcatcttagataaaaacccaaatctaaaaatacaatttttctctacaaaaagtaaaacccattttc |
169 |
Q |
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||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2226299 |
tcaatctttttactcaattcttcatcatagataaaaacccaaatctaaaaatacaaattttctctacaaaaagtaaaacccattttc |
2226385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 226 - 343
Target Start/End: Original strand, 2226443 - 2226560
Alignment:
| Q |
226 |
aatactttagcaatgtaacataaaccaaatgtaatgaactatgtagatccaaaacaaaagaatgaaaaaggcgagatcttaagacaattcgatagctaag |
325 |
Q |
| |
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||||||||||| |||||||||| ||||| ||||| |||| ||||||||||||||||| ||||||||| || ||||| ||||| ||| ||||| ||| |
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| T |
2226443 |
aatactttagctatgtaacatagggtaaatgcgatgaaatatgcagatccaaaacaaaagagtgaaaaaggtgaaatctttagacatttctatagccaag |
2226542 |
T |
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| Q |
326 |
aaacaagaaaacgatgaa |
343 |
Q |
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|||||||||||||||||| |
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| T |
2226543 |
aaacaagaaaacgatgaa |
2226560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 353
Target Start/End: Complemental strand, 36247043 - 36246915
Alignment:
| Q |
225 |
caatactttagcaatgtaacataaaccaaatgtaatgaactatgtagatccaaaacaaaagaatgaaaaaggcgagatcttaagacaattcgatagctaa |
324 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||| |||||||||||| |
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| T |
36247043 |
caatactttagctatgtaacataaggtaaatgtgatgaactttgtagatccaaaacaaaagagtgaaaaaggtgaaatctttagacatttcgatagctaa |
36246944 |
T |
|
| Q |
325 |
gaaacaagaaaacgatgaaacgaaaggat |
353 |
Q |
| |
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||||||| |||| ||||| |||||||| |
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|
| T |
36246943 |
gaaacaaccaaacaatgaagagaaaggat |
36246915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 36247176 - 36247113
Alignment:
| Q |
83 |
tcaatctttttactccaatcttcatcttagataaaaacccaaatctaaaaatacaatttttctc |
146 |
Q |
| |
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|||||| |||| || || ||||||||||| |||||||||||||||| |||||| |||||||||| |
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| T |
36247176 |
tcaatcattttgcttcattcttcatcttaaataaaaacccaaatcttaaaatataatttttctc |
36247113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 343
Target Start/End: Original strand, 19180897 - 19181015
Alignment:
| Q |
225 |
caatactttagcaatgtaacataaaccaaatgtaatgaactatgtagatccaaaacaaaagaatgaaaaaggcgagatcttaagacaattcgatagctaa |
324 |
Q |
| |
|
|||||||||||| || ||||| || |||||| ||||||| |||||||||||||||||||| |||||||| || ||||| ||||| |||||||||||| |
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| T |
19180897 |
caatactttagctatttaacacaaggtaaatgtgatgaactgtgtagatccaaaacaaaagagtgaaaaagttgaaatctttagacatttcgatagctaa |
19180996 |
T |
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| Q |
325 |
gaaacaagaaaacgatgaa |
343 |
Q |
| |
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||||||| |||||||||| |
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| T |
19180997 |
gaaacaaccaaacgatgaa |
19181015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 19180766 - 19180827
Alignment:
| Q |
85 |
aatctttttactccaatcttcatcttagataaaaacccaaatctaaaaatacaatttttctc |
146 |
Q |
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|||| |||| ||||| ||||||||||| |||||||| |||||| |||||| |||||||||| |
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| T |
19180766 |
aatcctttttctccattcttcatcttaaataaaaacttaaatcttaaaatataatttttctc |
19180827 |
T |
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