View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6807_low_9 (Length: 385)
Name: NF6807_low_9
Description: NF6807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6807_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 40494945 - 40495293
Alignment:
| Q |
17 |
cctcatccaagatttgatccatacatatttgcacttgctcttcaaatatttgcatagtagaagcaggcaaacccacaaacacattaataccttttgtatc |
116 |
Q |
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| T |
40494945 |
cctcatccaagatttgatccatacatatttgcacttgctcttcaaatatttgcatagtagaagcaggcaaacccacaaacacattaatactttttgtatc |
40495044 |
T |
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| Q |
117 |
ttcacgatgtggtaaaaacagaatgacttccttttgtggcaaagtaacaggacaaaaatacataggttttccccaaccaaaatcagcttcatgaaaagac |
216 |
Q |
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| T |
40495045 |
ttcacgatgtggtaaaaacagaatgacttccttttgtggcaaagtaacaggacaaaaatacttaggttttccccaaccaaaatcagcttcatgaaaagac |
40495144 |
T |
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| Q |
217 |
aacctggtccatgttgtgatcaaaagtgttgatgttaaagttggcttacttcttttaacttcaaaatagtcaataacagatctcatataactatctgtca |
316 |
Q |
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| T |
40495145 |
aacctggtccatgttgtgatcaaaagtgttgatgttaaagttggcttacttcttttaacttcaaaatagtcaataacagatctcatataactatctgtca |
40495244 |
T |
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| Q |
317 |
ccatctcaattgctttgttaatcaattccacactgaatgataatggatt |
365 |
Q |
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| T |
40495245 |
ccatctcaattgctttgttaatcaattccacactgaatgataatggatt |
40495293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 334
Target Start/End: Original strand, 45350339 - 45350520
Alignment:
| Q |
153 |
tggcaaagtaacaggacaaaaatacataggttttccccaaccaaaatcagcttcatgaaaagacaacctggtccatgttgtgatcaaaagtgttgatgtt |
252 |
Q |
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| T |
45350339 |
tggcaatgtaacaggaccagaacatagaggttcaccccaaccaaaatcagtagtgtcaaaagacaatttagtccaagttgtaatcaaaagtgtgcctgtt |
45350438 |
T |
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| Q |
253 |
aaagttggcttacttcttttaacttcaaaatagtcaataacagatctcatataactatctgtcaccatctcaattgctttgt |
334 |
Q |
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|||| ||| || |||| ||||||||||||| |||||| |||||||||||||||||||||| ||||| |||||||| |||| |
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| T |
45350439 |
aaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataactatctgtaaccatatcaattgccttgt |
45350520 |
T |
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