View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6808_high_6 (Length: 437)

Name: NF6808_high_6
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6808_high_6
NF6808_high_6
[»] chr4 (5 HSPs)
chr4 (219-414)||(35105107-35105302)
chr4 (31-135)||(35106310-35106415)
chr4 (263-318)||(49225440-49225495)
chr4 (276-326)||(22429609-22429659)
chr4 (272-308)||(46545732-46545768)
[»] chr8 (1 HSPs)
chr8 (219-414)||(6164796-6164993)
[»] chr1 (1 HSPs)
chr1 (343-386)||(29115058-29115101)
[»] chr2 (3 HSPs)
chr2 (264-322)||(24191845-24191903)
chr2 (270-311)||(18372280-18372321)
chr2 (270-318)||(19016042-19016090)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 219 - 414
Target Start/End: Complemental strand, 35105302 - 35105107
Alignment:
Q  219 aagttaagttagccaacttaaattggcaccggaagaacgaatttcgagatatcgaggatgagcacactctcaggtcttaagccaataccatcagatcaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35105302 aagttaagttagccaacttaaattggcaccggaagaacgaattccgagatatcgaggatgagcacactctcaggtcttaagccaataccatcagatcaac 35105203  T
Q  319 tcaaatgaatttaattacaactatataattaaacacgagcaatatcatggatgagtcaaactaattttattttaagttcatcgacgcatatcttga 414  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35105202 tcaaatgagtttaattacaactatataattaaacacgagcaatatcatggatgagtcaaactaattttattttaagttcatcgacgcatatcttga 35105107  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 35106415 - 35106310
Alignment:
Q  31 taaagggaattgcatcattgagttattggatttgattacnnnnnnnn-tgttagtttttcttttctcacctccaaccatttccgcgcgccctccaaaata 129  Q
    |||||||||||||||||||||||||||||||||||||||         |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35106415 taaagggaattgcatcattgagttattggatttgattacaaaaaaaaatgttggtttttcttttctcacctccaaccatttccgcgcgccctccaaaata 35106316  T
Q  130 tattta 135  Q
    ||||||    
T  35106315 tattta 35106310  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 49225440 - 49225495
Alignment:
Q  263 cgagatatcgaggatgagcacactctcaggtcttaagccaataccatcagatcaac 318  Q
    ||||| |||||||| ||||||||||||||| |||||||||| |||| |||| ||||    
T  49225440 cgagacatcgaggaagagcacactctcaggccttaagccaacaccaccagaccaac 49225495  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 22429659 - 22429609
Alignment:
Q  276 atgagcacactctcaggtcttaagccaataccatcagatcaactcaaatga 326  Q
    ||||||||||||| |||||| ||| |||||||| |||||||||| ||||||    
T  22429659 atgagcacactcttaggtctcaagtcaataccaccagatcaacttaaatga 22429609  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 46545768 - 46545732
Alignment:
Q  272 gaggatgagcacactctcaggtcttaagccaatacca 308  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  46545768 gaggaggagcacactctcaggtctcaagccaatacca 46545732  T

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Target: chr8 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 219 - 414
Target Start/End: Original strand, 6164796 - 6164993
Alignment:
Q  219 aagttaagttagccaacttaaattggcaccggaagaacgaatttcgagatat--cgaggatgagcacactctcaggtcttaagccaataccatcagatca 316  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | | ||||||||||||||||    
T  6164796 aagttaagttagccagcttaaattggcaccggaagaacgaatttcgagatatatcgaggatgagcacactctcaggtctcaggtcaataccatcagatca 6164895  T
Q  317 actcaaatgaatttaattacaactatataattaaacacgagcaatatcatggatgagtcaaactaattttattttaagttcatcgacgcatatcttga 414  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6164896 actcaaatgagtttaattacaactatataattaaacacgagcaatatcatggatgagtcaaactaattttattttaagttcatcgacgcatattttga 6164993  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 29115058 - 29115101
Alignment:
Q  343 ataattaaacacgagcaatatcatggatgagtcaaactaatttt 386  Q
    |||||||||||| | ||| |||||||||||||||||||||||||    
T  29115058 ataattaaacacaaacaaaatcatggatgagtcaaactaatttt 29115101  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 24191903 - 24191845
Alignment:
Q  264 gagatatcgaggatgagcacactctcaggtcttaagccaataccatcagatcaactcaa 322  Q
    ||||| || |||| |||||||||||||||||  ||||||||||||||||  ||||||||    
T  24191903 gagatctcaaggaggagcacactctcaggtcccaagccaataccatcaggccaactcaa 24191845  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 18372321 - 18372280
Alignment:
Q  270 tcgaggatgagcacactctcaggtcttaagccaataccatca 311  Q
    ||||||||||||| |||||||||||| ||| |||||||||||    
T  18372321 tcgaggatgagcatactctcaggtctcaagtcaataccatca 18372280  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 19016090 - 19016042
Alignment:
Q  270 tcgaggatgagcacactctcaggtcttaagccaataccatcagatcaac 318  Q
    ||||||| |||||||||| || |||| ||||||||||||||||| ||||    
T  19016090 tcgaggaggagcacactcccaagtctcaagccaataccatcagaccaac 19016042  T

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