View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_10 (Length: 407)
Name: NF6808_low_10
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 137 - 393
Target Start/End: Complemental strand, 46182142 - 46181886
Alignment:
| Q |
137 |
tgtagacatacttttttgatagagtctcgtctgagctttttctggattgccgtgtcccggtaagaaagttaggttgacactgagaactagaaaattcatc |
236 |
Q |
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| T |
46182142 |
tgtagacatacttttttgatagagtctcgtctgagctttttctggattgccttgtcccggtaagaaagttaggttgacactgagaactagaaaattcatc |
46182043 |
T |
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| Q |
237 |
agctacgggcaatataaatgacgataacaatggatcaggtgctacatttgacgatgacactatacgtgaagacccgcccaaaagggattgcaaatttcct |
336 |
Q |
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| T |
46182042 |
agctacgggcaatataaatgacgataacaatggatcaggtgctacatttgacgatgacactatacgtgaagacccgcccaaaagggattgcaaatttcct |
46181943 |
T |
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| Q |
337 |
tctcgcagttccttcctcaataaagacaacgttgaataagatccacctttccttgat |
393 |
Q |
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| T |
46181942 |
tctcgcagctccttcctcaataaagacaacgttgaataagatccacctttccttgat |
46181886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 46182270 - 46182197
Alignment:
| Q |
9 |
gacatcaccaccacattcaggaatactagcaaaaataagcatattttcttgaagaggtaatggactagtggaga |
82 |
Q |
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| T |
46182270 |
gacatcaccaccacattcaggaatactagcaaaaataagcatattttcttgaagaggtaatggactagtggaga |
46182197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 386
Target Start/End: Original strand, 37294722 - 37294860
Alignment:
| Q |
248 |
atataaatgacgataacaatggatcaggtgctacatttgacgatgacactatacgtgaagacccgcccaaaagggattgcaaatttccttctcgcagttc |
347 |
Q |
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| T |
37294722 |
atataaatgacgacagcagcggatcaggtgctgcattagacgaggacactatacatggagatccgccaaaaagggattgcaaatttccttctctcagctc |
37294821 |
T |
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| Q |
348 |
cttcctcaataaagacaacgttgaataagatccaccttt |
386 |
Q |
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| T |
37294822 |
cttcctcaataatgaaagtgtagaataagatccaccttt |
37294860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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