View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_13 (Length: 371)
Name: NF6808_low_13
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_13 |
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| [»] scaffold0024 (3 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 78 - 313
Target Start/End: Complemental strand, 29398 - 29163
Alignment:
| Q |
78 |
taaaatcctatagtttcatcctattatacaaacagcatccagcgactcagtattgtcaaatagcagctaatatggaactatagcgtagtggacagtattg |
177 |
Q |
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| T |
29398 |
taaaatcctatagtttcatcctattatacaaacagcatccagcgactcagtattgtcaaattgcagctaatgtggaactctagcgtagtggacagtattg |
29299 |
T |
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| Q |
178 |
aacaaatcaatattgctctgtcatacactacttagtacaaatgttttcaaatatcgactataacgacgctatagcactgtagggtactgaaatttgaaca |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
29298 |
aacaaatcaatattgctctgtcatacactacttagtacaaatgttctcaaatatcaactataacgacgctatatcactgtagcatactgaaatttgaaca |
29199 |
T |
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| Q |
278 |
agccgctgttttctgtgatccataattgacaacact |
313 |
Q |
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||| ||||||| ||| |||||| ||||||||||||| |
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| T |
29198 |
agctgctgtttcctgcgatccacaattgacaacact |
29163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 29505 - 29428
Alignment:
| Q |
6 |
tgagtgaacaacaacaaaaaacatacatccagtgtcgtgtcttctgtaacacatccttcacgccaatattaataaaat |
83 |
Q |
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| T |
29505 |
tgagtgaacaacaacaaaaaacatgcatgcagtgtcgtctcttctgtaacacatccttcacgccaatattaataaaat |
29428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 64412 - 64373
Alignment:
| Q |
313 |
taagcgttttaaattaagaaatttagatttacgtacagaa |
352 |
Q |
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| T |
64412 |
taagcgttttaaattaagaaatttagatttacgtacagaa |
64373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 7266050 - 7266002
Alignment:
| Q |
265 |
tgaaatttgaacaagccgctgttttctgtgatccataattgacaacact |
313 |
Q |
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| T |
7266050 |
tgaaatttgaaaaaactgccgttttctgtgatccataattgacaacact |
7266002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 2101691 - 2101636
Alignment:
| Q |
200 |
atacactacttagtacaaa-tgttttcaaatatcgactataacgacgctatagcac |
254 |
Q |
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| T |
2101691 |
atacactatttagtacaaagtgttgtcaaataacggctataacgacgctatagcac |
2101636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 21866675 - 21866723
Alignment:
| Q |
265 |
tgaaatttgaacaagccgctgttttctgtgatccataattgacaacact |
313 |
Q |
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|||||||||||||| ||||| ||||||| ||||| ||||||||||||| |
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| T |
21866675 |
tgaaatttgaacaaaccgctattttctgcaatccacaattgacaacact |
21866723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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