View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_14 (Length: 362)
Name: NF6808_low_14
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 33817101 - 33816781
Alignment:
| Q |
17 |
atggtgttggaatagtgagtggatcattgatggctcctgtgctcaaatctcaaccaggacaggcattccttaagatgcttccaggagaggtcttgttggc |
116 |
Q |
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| T |
33817101 |
atggtgttggaatagtgagtggatcattgatggctcctgtgctcaaatctcaaccaggacaggcattccttaagatgcttccaggagaggtcttgttggc |
33817002 |
T |
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| Q |
117 |
ttctcttgatgcagtcagtaagtaaaactcttctcataaaaccaaagttgatgatcttattgagtaacaatagtataatctttacaacaataaggagcat |
216 |
Q |
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| T |
33817001 |
ttctcttgatgcagtcagtaagtaaaactcttctcataaaaccaaagttgatgatcttattgagtaacaatagtataatctttacaacaacaaggagcat |
33816902 |
T |
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| Q |
217 |
tttagttctcagaaattgtaagagtttagaaatttaatctttaaatttatgaaatagcaaattagtctcttaaatttagtatttacagaatctgaataga |
316 |
Q |
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| T |
33816901 |
tttagttctc-gaatttgtaagagtttcgaaatttaatctttaaatttacgaaatagcaaattagtctcttaaatttagtatttacagaatctgaataga |
33816803 |
T |
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| Q |
317 |
ttggttggttcaactaaaaacc |
338 |
Q |
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| T |
33816802 |
ttggtcggttcaactaaaaacc |
33816781 |
T |
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Back To:
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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 43160924 - 43161006
Alignment:
| Q |
61 |
aaatctcaaccaggacaggcattccttaagatgcttccaggagaggtcttgttggcttctcttgatgcagtcagtaagtaaaa |
143 |
Q |
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| T |
43160924 |
aaatcccaaccaggaaaggcattcctaaggatgttgcctggagaggtgttgttggcttcccttgatgcagtcagtaagtaaaa |
43161006 |
T |
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