View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_17 (Length: 306)
Name: NF6808_low_17
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29082634 - 29082862
Alignment:
| Q |
1 |
ctcacctagaatctccatcatcatcgcaataatctctgtaatcgcagtcacttaaaatatctgcataatgtgttgaaggattgaaagtaatagcctgttt |
100 |
Q |
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| T |
29082634 |
ctcaccaagaatctctatcatcatcgcaataatctctgtaatcgcagtcacttaaaatatctgcataatgtgttgaaggattgaaagtaatagcctgttt |
29082733 |
T |
|
| Q |
101 |
ggaagggttgaatttaatcatctgttttagaaagtaaatccatctctggattgccttgttcatagcatgtgctaaatttcatacttttgttacattctca |
200 |
Q |
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| T |
29082734 |
ggaagggttgaatttaatcatctgttttagaaagtaaacccatctatggattgccttgttcatagcatgtgctaaatttcatacttttgttacattctca |
29082833 |
T |
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| Q |
201 |
gcatatttgtgtaaatagaggatagtgat |
229 |
Q |
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| T |
29082834 |
gcatatttgtgtaaatagaggatagtgat |
29082862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 29085388 - 29085428
Alignment:
| Q |
171 |
gctaaatttcatacttttgttacattctcagcatatttgtg |
211 |
Q |
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| T |
29085388 |
gctaaatttcacacttttgttacattcttagcatatttgtg |
29085428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 29082928 - 29082960
Alignment:
| Q |
266 |
caatcaagcaatgaaatttgcaactgttgatgt |
298 |
Q |
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| T |
29082928 |
caatcaatcaatgaaatttgcaactgttgatgt |
29082960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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