View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6808_low_18 (Length: 301)
Name: NF6808_low_18
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 34 - 283
Target Start/End: Original strand, 35497510 - 35497762
Alignment:
| Q |
34 |
gatactataatactcgtcccgatatctgtatctgtaaaacaaacatgtttgtatccgagttcatactttgtaggcagcaattttactctgtctccatacc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35497510 |
gatactataatactcgtcccgatatctgcatctgtaaaacaaacatgtttgtatccgagttcatactttgtaggcagcaattttactctgtctccatacc |
35497609 |
T |
|
| Q |
134 |
ctgtgtgcatttaagtgacatacctgtgcctattccatgtactttagtacc--agtgacaac-aaaaaatataacaattaacaaataatttagagatgat |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35497610 |
ctgtgtgcatttaagtgacatacctgtgcctattccatgtactttagtaccaaagtgacaacaaaaaaatataacaattaacaaataatttagagatgat |
35497709 |
T |
|
| Q |
231 |
tcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35497710 |
tcaatagtttgtatttagaacaatatatattcatagttgactaacgataaaaa |
35497762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 29246653 - 29246693
Alignment:
| Q |
194 |
aaaaaatataacaattaacaaataatttagagatgattcaa |
234 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
29246653 |
aaaaaatgtaacatataacaaataatttagagatgattcaa |
29246693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 46254113 - 46254017
Alignment:
| Q |
189 |
acaacaaaaaata-taacaattaacaaataatttagagatgattcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaat |
284 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||| ||| |||||| | ||||||||||||| ||||||||| |
|
|
| T |
46254113 |
acaacaaaaaaaagtaacaattaacaaataatttagagatgattcaacaatttgtatttgaaaccatatgtctccatagttgactaatgataaaaat |
46254017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 284
Target Start/End: Complemental strand, 11211233 - 11211145
Alignment:
| Q |
194 |
aaaaaatataacaattaacaaataatttagagatgattcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaat |
284 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| | ||| ||||| ||| | | ||| ||||||||||||||||||||||| |
|
|
| T |
11211233 |
aaaaaatgtaacaattaacaaataatttagagatgattcaacaatttctatttgaaaccaca--tatccatagttgactaacgataaaaat |
11211145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 2780810 - 2780849
Alignment:
| Q |
195 |
aaaaatataacaattaacaaataatttagagatgattcaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2780810 |
aaaaatataacaattaacaaataatttagagatgattcaa |
2780849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 32521656 - 32521615
Alignment:
| Q |
206 |
aattaacaaataatttagagatgattcaatagtttgtattta |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| |||||| |
|
|
| T |
32521656 |
aattaacaaataatttagagatgattcaacaatttttattta |
32521615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 36658212 - 36658244
Alignment:
| Q |
202 |
taacaattaacaaataatttagagatgattcaa |
234 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
36658212 |
taacaattaacaaataatttaaagatgattcaa |
36658244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University