View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6808_low_19 (Length: 295)

Name: NF6808_low_19
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6808_low_19
NF6808_low_19
[»] chr1 (5 HSPs)
chr1 (15-277)||(41453457-41453717)
chr1 (153-250)||(41426235-41426332)
chr1 (19-67)||(41426407-41426455)
chr1 (19-67)||(41431800-41431848)
chr1 (15-67)||(41442407-41442459)
[»] scaffold0648 (2 HSPs)
scaffold0648 (128-250)||(5718-5840)
scaffold0648 (19-67)||(5895-5943)
[»] scaffold0274 (2 HSPs)
scaffold0274 (128-250)||(17618-17740)
scaffold0274 (19-67)||(17515-17563)
[»] chr2 (4 HSPs)
chr2 (128-245)||(33363425-33363542)
chr2 (19-65)||(33370088-33370134)
chr2 (19-67)||(5839345-5839393)
chr2 (19-63)||(33363748-33363792)
[»] chr7 (2 HSPs)
chr7 (19-67)||(7763054-7763102)
chr7 (128-193)||(7763157-7763222)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 41453717 - 41453457
Alignment:
Q  15 tcaagagatccatccttgattcataaactctcacaaatattgtatctgatgagtattnnnnnnnnnnnnnnnnnnnnngaagaagataagattgagaaat 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||                      |||||||||||||||||||||    
T  41453717 tcaagagatccatccttgattcatagactctcacaaatattgtatctgatgagcattaaaaaaagtcaaaaaaaaaaa-aagaagataagattgagaaat 41453619  T
Q  115 ataccataatcatgtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  41453618 ataccataatcatgtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgt-gagtggacactaacgaggaaaaatttggaaat 41453520  T
Q  215 ctttcaaaaaggaagtattataaagaaaacatgccaaaaccgtttcgataagacgggaactag 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41453519 ctttcaaaaaggaagtattataaagaaaacatgccaaaaccgtttcgataagacgggaactag 41453457  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 41426332 - 41426235
Alignment:
Q  153 tcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaaggaagtattataaagaaaacatgcca 250  Q
    ||||||| |||| || | ||||||||| | |||||||||||| | ||||||||||||| ||| |||||| ||||| ||||||||||||| ||| ||||    
T  41426332 tcttgattccaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaatatttcaacaaggatgtattataaagaagacaagcca 41426235  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 41426455 - 41426407
Alignment:
Q  19 gagatccatccttgattcataaactctcacaaatattgtatctgatgag 67  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  41426455 gagatccatccttgattcacagactctcacaaatattgtatctgatgag 41426407  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 41431848 - 41431800
Alignment:
Q  19 gagatccatccttgattcataaactctcacaaatattgtatctgatgag 67  Q
    ||||||||||||||||||  | |||||||||||||||||||||||||||    
T  41431848 gagatccatccttgattcgaagactctcacaaatattgtatctgatgag 41431800  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 41442459 - 41442407
Alignment:
Q  15 tcaagagatccatccttgattcataaactctcacaaatattgtatctgatgag 67  Q
    ||||||||||||||||||||||  | ||||||||||||||||||| |||||||    
T  41442459 tcaagagatccatccttgattcgcagactctcacaaatattgtatttgatgag 41442407  T

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Target: scaffold0648 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 5840 - 5718
Alignment:
Q  128 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaagga 227  Q
    |||||||| | ||||| ||| ||||||||||| | || || | ||||||||| | |||||||||||| | ||||||||||||| ||| |||||| |||||    
T  5840 gtttcacattttggtatttataagttcttgattcaaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaatatttcaacaagga 5741  T
Q  228 agtattataaagaaaacatgcca 250  Q
     ||||||||||||||||| ||||    
T  5740 tgtattataaagaaaacaagcca 5718  T

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Target: scaffold0648; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 5943 - 5895
Alignment:
Q  19 gagatccatccttgattcataaactctcacaaatattgtatctgatgag 67  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  5943 gagatccattcttgattcacagactctcacaaatattgtatctgatgag 5895  T

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Target: scaffold0274 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 17618 - 17740
Alignment:
Q  128 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaagga 227  Q
    |||||||| | ||||| ||| ||||||||||| | || || | ||||||||| | |||||||||||| | ||||||||||||| ||| |||||| |||||    
T  17618 gtttcacattttggtatttataagttcttgattcaaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaatatttcaacaagga 17717  T
Q  228 agtattataaagaaaacatgcca 250  Q
     ||||||||||||||||| ||||    
T  17718 tgtattataaagaaaacaagcca 17740  T

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Target: scaffold0274; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 17515 - 17563
Alignment:
Q  19 gagatccatccttgattcataaactctcacaaatattgtatctgatgag 67  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  17515 gagatccattcttgattcacagactctcacaaatattgtatctgatgag 17563  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 33363542 - 33363425
Alignment:
Q  128 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaagga 227  Q
    |||| ||| ||||| | ||| ||||||||||| ||||||||| ||||||||| | | |||||| ||| |||||||| |||||| |||||||||| |||||    
T  33363542 gtttgacattatggcatttataagttcttgattccaatttcagaacaaatatatggtgtggacgccaccgaggaaatatttggcaatctttcaacaagga 33363443  T
Q  228 agtattataaagaaaaca 245  Q
      ||| || |||||||||    
T  33363442 tatatcatgaagaaaaca 33363425  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 33370134 - 33370088
Alignment:
Q  19 gagatccatccttgattcataaactctcacaaatattgtatctgatg 65  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  33370134 gagatccatccttgattcgtagactctcacaaatattgtatctgatg 33370088  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 5839345 - 5839393
Alignment:
Q  19 gagatccatccttgattcataaactctcacaaatattgtatctgatgag 67  Q
    ||||||||| ||||||||||||||||  |||||||||| ||||||||||    
T  5839345 gagatccattcttgattcataaactcgaacaaatattgaatctgatgag 5839393  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 33363792 - 33363748
Alignment:
Q  19 gagatccatccttgattcataaactctcacaaatattgtatctga 63  Q
    ||||||||||||||||||  | | |||||||||||||||||||||    
T  33363792 gagatccatccttgattcgaagattctcacaaatattgtatctga 33363748  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 7763054 - 7763102
Alignment:
Q  19 gagatccatccttgattcataaactctcacaaatattgtatctgatgag 67  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||    
T  7763054 gagatccatccttgattcgtagactctcacaaatattgtatctgatgag 7763102  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 7763157 - 7763222
Alignment:
Q  128 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacacc 193  Q
    |||||||| ||||||| ||| | ||||||||| ||||||||| ||||||||| | |||||||||||    
T  7763157 gtttcacattatggtatttatatgttcttgattccaatttcagaacaaatatatggagtggacacc 7763222  T

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