View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6808_low_2 (Length: 598)

Name: NF6808_low_2
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6808_low_2
NF6808_low_2
[»] chr4 (7 HSPs)
chr4 (264-520)||(10426677-10426932)
chr4 (171-266)||(10427623-10427718)
chr4 (172-266)||(9199750-9199845)
chr4 (172-233)||(9199512-9199573)
chr4 (215-266)||(9201332-9201384)
chr4 (172-233)||(12094864-12094925)
chr4 (172-233)||(24257703-24257764)
[»] chr7 (5 HSPs)
chr7 (298-499)||(4410741-4410938)
chr7 (172-266)||(20077317-20077412)
chr7 (172-266)||(4407779-4407872)
chr7 (179-260)||(30061499-30061581)
chr7 (268-296)||(4407898-4407926)
[»] chr8 (5 HSPs)
chr8 (171-266)||(26981034-26981130)
chr8 (172-266)||(26083903-26083998)
chr8 (172-261)||(5334273-5334363)
chr8 (172-229)||(42932716-42932773)
chr8 (170-202)||(7496756-7496788)
[»] chr6 (3 HSPs)
chr6 (171-263)||(31442516-31442609)
chr6 (172-258)||(20915980-20916067)
chr6 (172-241)||(7867948-7868018)
[»] chr5 (2 HSPs)
chr5 (172-261)||(6697935-6698025)
chr5 (209-266)||(9045160-9045218)
[»] chr3 (4 HSPs)
chr3 (197-266)||(11582599-11582669)
chr3 (169-225)||(2241513-2241569)
chr3 (170-248)||(39484801-39484881)
chr3 (171-241)||(15291460-15291530)
[»] chr2 (3 HSPs)
chr2 (172-243)||(38996518-38996590)
chr2 (171-243)||(22625385-22625458)
chr2 (172-241)||(28125536-28125606)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 264 - 520
Target Start/End: Complemental strand, 10426932 - 10426677
Alignment:
Q  264 taggttcattgctaccttcttaacatgtgacttgatgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatcct 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10426932 taggttcattgctaccttcttaacatgtgacttgatgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatcct 10426833  T
Q  364 tggtagcttctcctatgtgcggctgaagacttatctgatgcatatttccaaatcctatcaacaccattgtatatttattaattcagcacattggaattga 463  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10426832 tggtagcttctcctttgcgcggctgaagacttatctgatgcatatttccaaatcctatcaacaccattgtatatttattatttcagcacattggaattga 10426733  T
Q  464 tcaatttgaatgatacacatgcctccaaggtcttatctagaatttacagggcttgct 520  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10426732 tcaatttgaatgatacacatgcct-caaggtcttatctagaatttacagagcttgct 10426677  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 10427718 - 10427623
Alignment:
Q  171 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatatttccctccatcatccaagtattaaattctccttag 266  Q
    ||||||| ||| ||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||    
T  10427718 tatcttttttattaaaggttgtttggtcaagcaatatcataccctaattttaacctaatatttccctccatcatccaagcattaaattcttcttag 10427623  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 9199750 - 9199845
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 266  Q
    ||||||||||||||||||| | || ||||||||||||||| || | | ||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatcatccaagcattaaattctccttag 9199845  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 9199512 - 9199573
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 233  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattt 9199573  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 9201332 - 9201384
Alignment:
Q  215 taattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 266  Q
    |||||||||| |||||||| ||| |||||||||||| ||||||||||||||||    
T  9201332 taattttaacctaatattttcccaccatcatccaagcattaaattctccttag 9201384  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 12094925 - 12094864
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 233  Q
    ||||||||||||||||||| |||| |||||| ||   | |||||||||||||| ||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattt 12094864  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 24257703 - 24257764
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 233  Q
    ||||||||||||||||||| |||| |||||||||     |||||||||||||| ||||||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatattt 24257764  T

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Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 298 - 499
Target Start/End: Original strand, 4410741 - 4410938
Alignment:
Q  298 atgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatccttggtagcttctcctatgtgcggctgaagacttat 397  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||     | |||| ||    
T  4410741 atgcgctaatcttatcttaataaacataagttgcatcgtaaatgtaaggaaagttgaaaatatccttggtagcttctcctttgtgca----atgactgat 4410836  T
Q  398 ctgatgcatatttccaaatcctatcaacaccattgtatatttattaattcagcacattggaattgatcaatttgaatgatacacatgcctccaaggtctt 497  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  4410837 ctgatgcatattttcaaatcctatcagcaccattgtatattaattaattcagcacattggaattgatcaatgtgaatggtacacatgcctccaaggtctt 4410936  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 20077412 - 20077317
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 266  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaattcaccttag 20077317  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 4407779 - 4407872
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 266  Q
    ||||||||||||||||| |||  | |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  ||||||||||||||||    
T  4407779 atctttcttactaaagcgtct--ggtcaagcaatatcataccctaattttaacctaatattttccctccatcacccaaacattaaattctccttag 4407872  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 30061499 - 30061581
Alignment:
Q  179 ttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattct 260  Q
    |||||||||||| | ||||||||| || |||||||||||||| | | ||||| |||||||||||  | |||||||| ||||||    
T  30061499 ttactaaagcttgtctgatcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagtatttaattct 30061581  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 296
Target Start/End: Original strand, 4407898 - 4407926
Alignment:
Q  268 ttcattgctaccttcttaacatgtgactt 296  Q
    |||||||||||||||||||||||||||||    
T  4407898 ttcattgctaccttcttaacatgtgactt 4407926  T

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Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 26981034 - 26981130
Alignment:
Q  171 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 266  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||    
T  26981034 tatctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatcatccaagcattaaattctccttag 26981130  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 26083903 - 26083998
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 266  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||| |||||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttag 26083998  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 5334273 - 5334363
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctc 261  Q
    |||||||||| ||||  || | ||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||    
T  5334273 atctttcttattaaaaattatctgatcaaacaatatcataccctaattttaacctaagattttccctccatcatccaagcattaaattctc 5334363  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 42932716 - 42932773
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaat 229  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||||||| ||||    
T  42932716 atctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaat 42932773  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 7496756 - 7496788
Alignment:
Q  170 ttatctttcttactaaagcttctttgatcaagc 202  Q
    ||||||||||||||||||||| |||||||||||    
T  7496756 ttatctttcttactaaagcttgtttgatcaagc 7496788  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 31442516 - 31442609
Alignment:
Q  171 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctcct 263  Q
    |||||||||||||||||||| |||| |||||||||  ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  31442516 tatctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcct 31442609  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 20916067 - 20915980
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaatt 258  Q
    ||||||||||||||||||| | |||||||||||||| ||||| |||||||||| ||||| ||||||||||||||||||| ||||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatcatccaagcattaaatt 20915980  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 7868018 - 7867948
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccat 241  Q
    ||||||||||||||||||| | || |||||| || |||||||||||||| | | ||||| |||||||||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccat 7867948  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 6697935 - 6698025
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctc 261  Q
    ||||||||||||||| ||| | || ||||||||| ||||||| |||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  6697935 atctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatcatgcaagcattaaattctc 6698025  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 9045160 - 9045218
Alignment:
Q  209 ataccctaattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 266  Q
    |||||||||||||||| |||||||| |||||||||||| ||  ||||||||||||||||    
T  9045160 ataccctaattttaacctaatattttccctccatcatcaaaacattaaattctccttag 9045218  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 11582599 - 11582669
Alignment:
Q  197 tcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 266  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||  |||||||||| |||||    
T  11582599 tcaagcaatatcataccctaattttaacctaatattttccctccgtcatccaaacattaaattcttcttag 11582669  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 2241569 - 2241513
Alignment:
Q  169 cttatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaact 225  Q
    ||||| |||||||||||||||| |||  ||||||||| ||||||| |||||||||||    
T  2241569 cttatttttcttactaaagcttgtttcgtcaagcaatttcataccttaattttaact 2241513  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 39484881 - 39484801
Alignment:
Q  170 ttatctttcttactaaagcttctttgatcaagcaatatcat-accctaattttaacttaata-tttccctccatcatccaa 248  Q
    ||||||||||||||||||||| |||| |||||| ||||  | |||||| ||||||| ||||| ||||||||||||| ||||    
T  39484881 ttatctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaa 39484801  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 15291460 - 15291530
Alignment:
Q  171 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatatttccctccat 241  Q
    |||||||||||||||||||| |||| |||||| ||    ||||||||| ||||| |||| |||||||||||    
T  15291460 tatctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaatttttccctccat 15291530  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 38996590 - 38996518
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatca 243  Q
    ||||||||||||||||||| | ||||||||| ||||  ||||||||||||||| ||||| |||||||||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccatca 38996518  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 22625458 - 22625385
Alignment:
Q  171 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatca 243  Q
    |||||||||||||||| ||| | || |||||||||   |||||||||||||||| ||||| |||||||||||||    
T  22625458 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 22625385  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 28125536 - 28125606
Alignment:
Q  172 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccat 241  Q
    ||||||||||||||||||| | || |||||| || |||||||||||||| | | ||||| |||||||||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccat 28125606  T

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