View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_20 (Length: 294)
Name: NF6808_low_20
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 14812593 - 14812310
Alignment:
| Q |
1 |
aaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaatgcaccttgcaaagaggcttttgtttgggaaaacaatat |
100 |
Q |
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| T |
14812593 |
aaggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttccaaagaggcttttgtttgggaaaacaatat |
14812494 |
T |
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| Q |
101 |
ctgaagatatatagagaagtctcgctgttaaactcaa--gaatatgtggatacaaatttgcactattagagataatggttatggatatgaaaacctcaaa |
198 |
Q |
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| T |
14812493 |
ctgaagatatagagagaagtctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaa |
14812394 |
T |
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| Q |
199 |
agaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
282 |
Q |
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| T |
14812393 |
agaaatgttacaaggcttttatagaagccacgctaagctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
14812310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 15259588 - 15259305
Alignment:
| Q |
1 |
aaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaatgcaccttgcaaagaggcttttgtttgggaaaacaatat |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |
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| T |
15259588 |
aaggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttacaaagaggcttttgtttggaaaaacaatat |
15259489 |
T |
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| Q |
101 |
ctgaagatatatagagaagtctcgctgttaaactcaa--gaatatgtggatacaaatttgcactattagagataatggttatggatatgaaaacctcaaa |
198 |
Q |
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| T |
15259488 |
ctgaagatatagagagaaatctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaa |
15259389 |
T |
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| Q |
199 |
agaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
282 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
15259388 |
agaaatgttacaaggcttttatagaagccacgctaagcaaggagatgatccaaaactaaattttcaggttctgaccacaggttc |
15259305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 14805009 - 14804890
Alignment:
| Q |
163 |
attagagataatggttatggatatgaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaattttt |
262 |
Q |
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|||||||| ||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||| ||||||| | || |
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| T |
14805009 |
attagagacaatggttgctgatacgaaaacctcaaaagaaacgttacaagggttttatagaagccacgctgagctaagtgatgatcctaaactaagtgtt |
14804910 |
T |
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| Q |
263 |
caggttctgaccacaggttc |
282 |
Q |
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| T |
14804909 |
cacgttttgaccacaggttc |
14804890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 15252003 - 15251884
Alignment:
| Q |
163 |
attagagataatggttatggatatgaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaattttt |
262 |
Q |
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|||||||| ||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||| ||||||| | || |
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| T |
15252003 |
attagagacaatggttgctgatacgaaaacctcaaaagaaacgttacaagggttttatagaagccacgctgagctaagtgatgatcctaaactaagtgtt |
15251904 |
T |
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| Q |
263 |
caggttctgaccacaggttc |
282 |
Q |
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| T |
15251903 |
cacgttttgaccacaggttc |
15251884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 17521587 - 17521870
Alignment:
| Q |
1 |
aaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaatgcaccttgcaaagaggcttttgtttgggaaaacaatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
17521587 |
aaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttgcaaagaggcttttgtttggcaaaacaatat |
17521686 |
T |
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| Q |
101 |
ctgaagatatatagagaagtctcgctgttaaactcaa--gaatatgtggatacaaatttgcactattagagataatggttatggatatgaaaacctcaaa |
198 |
Q |
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||||||||||| |||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17521687 |
ctgaagatatagagagaaatctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaa |
17521786 |
T |
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| Q |
199 |
agaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
17521787 |
agaaatgttacaaggcttttatagaagccacgctgagcgaggtgatgatccaaaactaagttttcaggttctgaccacaggttc |
17521870 |
T |
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