View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6808_low_22 (Length: 247)

Name: NF6808_low_22
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6808_low_22
NF6808_low_22
[»] chr5 (2 HSPs)
chr5 (33-246)||(20372009-20372221)
chr5 (33-246)||(20397733-20397945)
[»] chr2 (3 HSPs)
chr2 (32-246)||(35038598-35038809)
chr2 (139-246)||(26718759-26718867)
chr2 (139-246)||(26732947-26733055)
[»] chr3 (2 HSPs)
chr3 (33-246)||(18954726-18954940)
chr3 (139-246)||(27551991-27552097)
[»] scaffold0431 (1 HSPs)
scaffold0431 (53-246)||(2950-3143)
[»] chr4 (1 HSPs)
chr4 (53-246)||(12426832-12427025)
[»] scaffold0173 (1 HSPs)
scaffold0173 (53-246)||(81-274)
[»] scaffold0632 (1 HSPs)
scaffold0632 (64-200)||(5226-5361)
[»] chr7 (3 HSPs)
chr7 (139-246)||(1888042-1888150)
chr7 (139-246)||(1902143-1902251)
chr7 (139-246)||(24187241-24187349)
[»] chr6 (1 HSPs)
chr6 (139-246)||(19827686-19827795)
[»] chr1 (1 HSPs)
chr1 (194-235)||(11949071-11949112)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 20372221 - 20372009
Alignment:
Q  33 ggatcggagagaggaagcagatcggatcggcgcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcacaaaccgaatcggctcctcct 132  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20372221 ggatcggagagaggaagcagatcagatcggagcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcacaaaccgaatcggctcctcct 20372122  T
Q  133 tgttagagcagatcggaatccgaggtaaagaagggagtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatct 232  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  20372121 tgttagagcagatcggaatccgaggtaaagaaggtagtattttattttcgtattgtttgattgtagatctag-acgtgttgttgcttttctttgaaatct 20372023  T
Q  233 aagaacggatctat 246  Q
    |||  |||||||||    
T  20372022 aagtccggatctat 20372009  T

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Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 20397945 - 20397733
Alignment:
Q  33 ggatcggagagaggaagcagatcggatcggcgcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcacaaaccgaatcggctcctcct 132  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20397945 ggatcggagagaggaagcaaatcagatcggagcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcataaaccgaatcggctcctcct 20397846  T
Q  133 tgttagagcagatcggaatccgaggtaaagaagggagtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatct 232  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  20397845 tgttagagcagatcggaatccgaggtaaagaaggtagtattttattttcgtattgtttgattgtagatctag-acgtgttgttgcttttctttgaaatct 20397747  T
Q  233 aagaacggatctat 246  Q
    |||  |||||||||    
T  20397746 aagtccggatctat 20397733  T

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Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 35038598 - 35038809
Alignment:
Q  32 tggatcggagagaggaagcagatcggatcggcgcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcacaaaccgaatcggctcctcc 131  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35038598 tggatcggagagaggaagcagattggatcggagcgtgaaggaag---aagaaactgaaccggccttacaacgctgaagcacaaaccgaatcggctcctcc 35038694  T
Q  132 ttgttagagcagatcggaatccgaggtaaagaagggagtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatc 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35038695 ttgttagagcagatcggaatccgaggtaaagaaggtagtattttattttcgtgttgtttgattgtagatctagaacgtgttgttgcttttctttgaaatc 35038794  T
Q  232 taagaacggatctat 246  Q
    ||||  |||||||||    
T  35038795 taagtccggatctat 35038809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 26718867 - 26718759
Alignment:
Q  139 agcagatcggaatccgaggtaaagaaggg-agtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatctaagaa 237  Q
    ||||||||||||||||||||||| || || |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||      
T  26718867 agcagatcggaatccgaggtaaaaaaaggtagtattttattttcgtgttgtttgaatgtagatctagaacgtgttgttgcttttctttgaaatctaagtc 26718768  T
Q  238 cggatctat 246  Q
    |||||||||    
T  26718767 cggatctat 26718759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 26733055 - 26732947
Alignment:
Q  139 agcagatcggaatccgaggtaaagaaggg-agtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatctaagaa 237  Q
    ||||||||||||||||||||||| || || |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||      
T  26733055 agcagatcggaatccgaggtaaaaaaaggtagtattttattttcgtgttgtttgaatgtagatctagaacgtgttgttgcttttctttgaaatctaagtc 26732956  T
Q  238 cggatctat 246  Q
    |||||||||    
T  26732955 cggatctat 26732947  T

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Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 18954940 - 18954726
Alignment:
Q  33 ggatcggagagaggaagcagatcggatcggcgcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcacaaaccgaatcggctcctcct 132  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18954940 ggatcggagagaggaagaagatcggatcggagcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcataaaccgaatcggctcctcct 18954841  T
Q  133 tgttagagcagatcggaatccgaggtaaagaagggagta-ttttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatc 231  Q
    || ||||| ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18954840 tgctagagtagatcggaatccgaggtaaagaaggtagtatttttattttcgtgttgtttgattgtagatctagaacgcgttgttgcttttctttgaaatc 18954741  T
Q  232 taagaacggatctat 246  Q
    ||||  |||||||||    
T  18954740 taagtccggatctat 18954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 27552097 - 27551991
Alignment:
Q  139 agcagatcggaatccgaggtaaagaagggagtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatctaagaac 238  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||  |    
T  27552097 agcagatcggaatccgaggtaaaaaaggtagtattttattttcgt-ttgtttgattgtagatctagaacgtgttattgcttttctttgaaatctaagtcc 27551999  T
Q  239 ggatctat 246  Q
    ||||||||    
T  27551998 ggatctat 27551991  T

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Target: scaffold0431 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 53 - 246
Target Start/End: Original strand, 2950 - 3143
Alignment:
Q  53 atcggatcggcgcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcacaaaccgaatcggctcctccttgttagagcagatcggaatc 152  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2950 atcggatcggagcgtgaaggaagaagaagaaatcgaaccggccttacaacgctgaagcacaaaccgaatcggctcctccttgttagagcagatcggaatc 3049  T
Q  153 cgaggtaaagaagggagtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatctaagaacggatctat 246  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  3050 cgaggtaaagaatgtagtattttattttcgtgttgtttgattgtagatctagaacgtgttgttgcttttctttgaaatctaagtccggatctat 3143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 53 - 246
Target Start/End: Complemental strand, 12427025 - 12426832
Alignment:
Q  53 atcggatcggcgcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcacaaaccgaatcggctcctccttgttagagcagatcggaatc 152  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12427025 atcggatcggagcgtgaaggaagaagaagaaatcgaaccggccttacaacgctgaagcacaaaccgaatcggctcctccttgttagagcagatcggaatc 12426926  T
Q  153 cgaggtaaagaagggagtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatctaagaacggatctat 246  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  12426925 cgaggtaaagaatgtagtattttattttcgtgttgtttgattgtagatctagaacgtgttgttgcttttctttgaaatctaagtccggatctat 12426832  T

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Target: scaffold0173 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 53 - 246
Target Start/End: Complemental strand, 274 - 81
Alignment:
Q  53 atcggatcggcgcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcacaaaccgaatcggctcctccttgttagagcagatcggaatc 152  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  274 atcggatcggagcgtgaaagaagaagaagaaaccgaaccggccttacaacgctgaagcacaaaccgaattggctcctccttcttagagcatatcggaatc 175  T
Q  153 cgaggtaaagaagggagtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatctaagaacggatctat 246  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  174 cgaggtaaagaaggtagtattttattttcgtgttgtttgattgtagatctagaacgtgttgttgcttttctttgaaatctaagtccggatctat 81  T

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Target: scaffold0632 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 5226 - 5361
Alignment:
Q  64 gcgtgaaggaagaagaagaaactgaaccggccttacaacgctgaagcacaaaccgaatcggctcctccttgttagagcagatcggaatccgaggtaaaga 163  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||    
T  5226 gcgtgaaggaagaagaagaaactgaaccggccttgcagcgctgaagcacaaaccgattcggctcctccttgctagaacagatcggaatccgaggtaaaga 5325  T
Q  164 agggagtattttgttttcgtgttgtttgattgtagat 200  Q
    ||| |||||||| ||| ||| ||||||||||||||||    
T  5326 aggtagtattttatttccgt-ttgtttgattgtagat 5361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 1888150 - 1888042
Alignment:
Q  139 agcagatcggaatccgaggtaaagaaggg-agtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatctaagaa 237  Q
    ||||||||||||||||||||||| || || |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||      
T  1888150 agcagatcggaatccgaggtaaaaaaaggtagtattttattttcgtgttgtttgaatgtagatctagaacgtgttgttgcttttctttgaaatctaagtc 1888051  T
Q  238 cggatctat 246  Q
    |||||||||    
T  1888050 cggatctat 1888042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 1902251 - 1902143
Alignment:
Q  139 agcagatcggaatccgaggtaaagaaggg-agtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatctaagaa 237  Q
    ||||||||||||||||||||||| || || |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||      
T  1902251 agcagatcggaatccgaggtaaaaaaaggtagtattttattttcgtgttgtttgaatgtagatctagaacgtgttgttgcttttctttgaaatctaagtc 1902152  T
Q  238 cggatctat 246  Q
    |||||||||    
T  1902151 cggatctat 1902143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 24187349 - 24187241
Alignment:
Q  139 agcagatcggaatccgaggtaaagaaggg-agtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatctaagaa 237  Q
    ||||||||||||||||||||||| || || |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||      
T  24187349 agcagatcggaatccgaggtaaaaaaaggtagtattttattttcgtgttgtttgaatgtagatctagaacgtgttgttgcttttctttgaaatctaagtc 24187250  T
Q  238 cggatctat 246  Q
    |||||||||    
T  24187249 cggatctat 24187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 19827795 - 19827686
Alignment:
Q  139 agcagatcggaatccgaggtaaagaa--gggagtattttgttttcgtgttgtttgattgtagatctagaacgggttgttgcttttctttgaaatctaaga 236  Q
    ||||||||||||||||||||||| ||  || |||||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||     
T  19827795 agcagatcggaatccgaggtaaaaaaaaggtagtattttattttcgtgttgtttgatattagatctagaacgtgttgttgcttttctttgaaatctaagt 19827696  T
Q  237 acggatctat 246  Q
     |||||||||    
T  19827695 ccggatctat 19827686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 11949071 - 11949112
Alignment:
Q  194 tgtagatctagaacgggttgttgcttttctttgaaatctaag 235  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  11949071 tgtagatctagaacatgttgttgcttttctttgaaatctaag 11949112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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