View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_24 (Length: 243)
Name: NF6808_low_24
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 17521356 - 17521596
Alignment:
| Q |
1 |
aggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataagtatgatatagtatattaaacttggcatttaatcatgatgaagaatt |
100 |
Q |
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| T |
17521356 |
aggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgata--gtatattaaacttggcatttaatcatgatgaagaatt |
17521453 |
T |
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| Q |
101 |
ccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggt |
200 |
Q |
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| T |
17521454 |
ccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggt |
17521553 |
T |
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| Q |
201 |
ttcgaacgaagtagtgtggaaattattcttgacaaggtggtga |
243 |
Q |
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| T |
17521554 |
ttcgaaggaaatagtgaggaaattattcttgacaaggtggtga |
17521596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14812824 - 14812588
Alignment:
| Q |
1 |
aggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataagtatgatatagtatattaaacttggcatttaatcatgatgaagaatt |
100 |
Q |
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| T |
14812824 |
aggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgata--gtatattaaacttggcatttaatcatgatgaagaatt |
14812727 |
T |
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| Q |
101 |
ccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggt |
200 |
Q |
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| T |
14812726 |
ccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggt |
14812627 |
T |
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| Q |
201 |
ttcgaacgaagtagtgtggaaattattcttgacaaggtg |
239 |
Q |
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| T |
14812626 |
ttcgaaggaaatagtgaggaaattattcttgacaaggtg |
14812588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15259819 - 15259583
Alignment:
| Q |
1 |
aggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataagtatgatatagtatattaaacttggcatttaatcatgatgaagaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15259819 |
aggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgata--gtatattaaacttggcatttaatcatgatgaagaatt |
15259722 |
T |
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| Q |
101 |
ccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggt |
200 |
Q |
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| T |
15259721 |
ccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggt |
15259622 |
T |
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| Q |
201 |
ttcgaacgaagtagtgtggaaattattcttgacaaggtg |
239 |
Q |
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| T |
15259621 |
ttcgaaggaaatagtgaggaaattattcttgacaaggtg |
15259583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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