View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_25 (Length: 243)
Name: NF6808_low_25
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 14812800 - 14813034
Alignment:
| Q |
1 |
caaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacatagagattcactactttctgtattgtaaggagtcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |
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| T |
14812800 |
caaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaaca--gagattcgctactttctgtattgtaaagagtcc |
14812897 |
T |
|
| Q |
101 |
attaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattgtcaagaaagagaattactaaccaagaatttcctatgtggattaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
14812898 |
attaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctatccggattaat |
14812997 |
T |
|
| Q |
201 |
ctaagcatgtggttttcaataatctccttgtacattg |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
14812998 |
ctaagcatgtggttttcaataatctccttgtacattg |
14813034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15259795 - 15260029
Alignment:
| Q |
1 |
caaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacatagagattcactactttctgtattgtaaggagtcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |
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| T |
15259795 |
caaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaaca--gagattcgctactttctgtattgtaaagagtcc |
15259892 |
T |
|
| Q |
101 |
attaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattgtcaagaaagagaattactaaccaagaatttcctatgtggattaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
15259893 |
attaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctatccggattaat |
15259992 |
T |
|
| Q |
201 |
ctaagcatgtggttttcaataatctccttgtacattg |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
15259993 |
ctaagcatgtggttttcaataatctccttgtacattg |
15260029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 14749959 - 14749996
Alignment:
| Q |
192 |
tggattaatctaagcatgtggttttcaataatctcctt |
229 |
Q |
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| T |
14749959 |
tggattaatctaagcatgtgattttcaatagtctcctt |
14749996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 14757878 - 14757915
Alignment:
| Q |
192 |
tggattaatctaagcatgtggttttcaataatctcctt |
229 |
Q |
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| T |
14757878 |
tggattaatctaagcatgtgattttcaatcatctcctt |
14757915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 17521380 - 17521146
Alignment:
| Q |
1 |
caaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacatagagattcactactttctgtattgtaaggagtcc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |
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| T |
17521380 |
caaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaaca--gagattcgctactttctgtattgtaaagagtcc |
17521283 |
T |
|
| Q |
101 |
attaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattgtcaagaaagagaattactaaccaagaatttcctatgtggattaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
17521282 |
attaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctatccggattaat |
17521183 |
T |
|
| Q |
201 |
ctaagcatgtggttttcaataatctccttgtacattg |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
17521182 |
ctaagcatgtggttttcaataatctccttgtacattg |
17521146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 17621904 - 17621964
Alignment:
| Q |
169 |
ttactaaccaagaatttcctatgtggattaatctaagcatgtggttttcaataatctcctt |
229 |
Q |
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||||||||| ||||||| | || ||||||||||||||||||| ||||||||||||||||| |
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| T |
17621904 |
ttactaacccagaattttccatatggattaatctaagcatgtcattttcaataatctcctt |
17621964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 17570657 - 17570620
Alignment:
| Q |
192 |
tggattaatctaagcatgtggttttcaataatctcctt |
229 |
Q |
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|||||||||||||||||||| |||||||| |||||||| |
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| T |
17570657 |
tggattaatctaagcatgtgattttcaatcatctcctt |
17570620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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