View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_26 (Length: 240)
Name: NF6808_low_26
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_26 |
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| [»] scaffold0091 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 43126437 - 43126652
Alignment:
| Q |
12 |
ggacatcaatatggattcaggtccagttgcaacttatcaggttcatgagtatctaagacctaaggttaggttcttgttgcgacgatgaacattatatttc |
111 |
Q |
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| T |
43126437 |
ggacatcaatatggattcaggtccagttgcaacttatcaggttcatgagtatctaagacctaaggttaggttcttgttgtgacgatgaacattatatttc |
43126536 |
T |
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| Q |
112 |
tttctgctgctctattgtgttataacttgctatgcttgtttgaacatgccagctttgtgatttatatgaaaacgattcaatatttgataagttcgagtgt |
211 |
Q |
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| T |
43126537 |
tttctgctgctctattgtgttttaacttgctatgcttgtttgaacatgccagctttgtgatttatatgaaaacgattcaatatttgataagttcgagtgt |
43126636 |
T |
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| Q |
212 |
tgtctgagtggtgatg |
227 |
Q |
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| T |
43126637 |
tgtctgagtggtgatg |
43126652 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 18465788 - 18465843
Alignment:
| Q |
12 |
ggacatcaatatggattcaggtccagttgcaacttatcaggttcatgagtatctaa |
67 |
Q |
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| T |
18465788 |
ggacattaatatggattcaggtcccgttgcaacttatcaggttcataagtatctaa |
18465843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 18465862 - 18465918
Alignment:
| Q |
171 |
atttatatgaaaacgattcaatatttgataagttcgagtgttgtctgagtggtgatg |
227 |
Q |
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| T |
18465862 |
atttatatgaaaacgaatcgatacttgataagtttgagtgttgtcagagtggtgatg |
18465918 |
T |
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Target: scaffold0091 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 6555 - 6489
Alignment:
| Q |
161 |
cagctttgtgatttatatgaaaacgattcaatatttgataagttcgagtgttgtctgagtggtgatg |
227 |
Q |
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| T |
6555 |
cagctatgtgatttatacgaaaacgattcaatttttgataagtttgaatgttgtctcagtggtgatg |
6489 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 5227138 - 5227072
Alignment:
| Q |
161 |
cagctttgtgatttatatgaaaacgattcaatatttgataagttcgagtgttgtctgagtggtgatg |
227 |
Q |
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| T |
5227138 |
cagctatgtgatttatacgaaaacgattcaatttttgataagtttgaatgttgtctcagtggtgatg |
5227072 |
T |
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