View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_27 (Length: 240)
Name: NF6808_low_27
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 26730354 - 26730580
Alignment:
| Q |
1 |
cgttctatatgggatgattgcannnnnnngctgttgtagaataatgtagattgattagcactgtgaagtccaaacccttgactgtttgtttatggaatgg |
100 |
Q |
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| T |
26730354 |
cgttctgtatgggatgattgcatttttttgctgttgtagaataatgtagattgattagcactgtgaagtccaaacccttgactgtttgtttatggaatgg |
26730453 |
T |
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| Q |
101 |
atatagtatgaataaatggattgtatgcttaattatatatataggtttagagtttactccagcagaacaaattatcaaggatgctatagaaacctatggg |
200 |
Q |
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| T |
26730454 |
atatagtatgaataaatggattgtatgcttaat--tatatataggtttagagtttactccagcagaacaaattatcaaggatgctatagaaacctatggg |
26730551 |
T |
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| Q |
201 |
ggctgaatacaatgtgacatgtggtgatg |
229 |
Q |
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| T |
26730552 |
ggctgaatacaatgtgacatgtggtgatg |
26730580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 26674443 - 26674484
Alignment:
| Q |
188 |
agaaacctatgggggctgaatacaatgtgacatgtggtgatg |
229 |
Q |
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| T |
26674443 |
agaaacctatgggggctgaatacaatgtgacatgtgatgatg |
26674484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 26674361 - 26674403
Alignment:
| Q |
142 |
taggtttagagtttactccagcagaacaaattatcaaggatgc |
184 |
Q |
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| T |
26674361 |
tagggttagagttcactccagcagaagaaattatcaaggatgc |
26674403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 44614749 - 44614807
Alignment:
| Q |
37 |
tagaataatgtagattgattagcactgtgaagtccaaacccttgactgtttgtttatgg |
95 |
Q |
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| T |
44614749 |
tagaataatgtagattggttagcagtgtggagttcacacccttgactgtttggttatgg |
44614807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 44789965 - 44789907
Alignment:
| Q |
37 |
tagaataatgtagattgattagcactgtgaagtccaaacccttgactgtttgtttatgg |
95 |
Q |
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||||||||||||||||| |||||| |||| ||| || ||||||||||||||| |||||| |
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| T |
44789965 |
tagaataatgtagattggttagcagtgtggagttcacacccttgactgtttggttatgg |
44789907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 44793820 - 44793762
Alignment:
| Q |
37 |
tagaataatgtagattgattagcactgtgaagtccaaacccttgactgtttgtttatgg |
95 |
Q |
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| T |
44793820 |
tagaataatgtagattggttagcagtgtggagttcacacccttgactgtttggttatgg |
44793762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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