View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_29 (Length: 235)
Name: NF6808_low_29
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 8757896 - 8758123
Alignment:
| Q |
1 |
tctcttacattgcattgcacgtgccggatagcgaggaacttgctctggctgaggtgctaggagtgcttgaatgggcatccaagcaatctttcatgcaaca |
100 |
Q |
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| T |
8757896 |
tctcttacattgcattgcatgtgccggatagcgaggaacttgctctggctgaggtgctaggagtgcttgaatgggcatccaagcaatctttcatgcaaca |
8757995 |
T |
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| Q |
101 |
tgatgaaacccttgaagaattgttgcaagaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccatcataaattgcatcagtag |
200 |
Q |
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| T |
8757996 |
tgatgaaacccttgaagaattgttgcaagaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccatcataaattgcatcagtag |
8758095 |
T |
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| Q |
201 |
gaagagtagtacattgccatcatcattg |
228 |
Q |
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| T |
8758096 |
gaagaatagtacattgccatcatcattg |
8758123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 32030558 - 32030362
Alignment:
| Q |
9 |
attgcattgcacgtgccggatagcgaggaacttgctctggctgaggtgctaggagtgcttgaatgggcatccaagcaatctttcatgcaacatgatgaaa |
108 |
Q |
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| T |
32030558 |
attgcgttgcacgtgccagacagcgaagaactagcaaaagctgagattctgggagttcttgaatgggcgtctaagcaacctaacatggctcatgatgaag |
32030459 |
T |
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| Q |
109 |
cccttgaagaattgttgcaagaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccatcataaattgcatcagtaggaagagta |
208 |
Q |
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| T |
32030458 |
ctattgaggcattgttgcaagagtccaagagtaggctggagctttaccagtctagaggttcaagaggattc---caaaaattacatcaataggaagagta |
32030362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 28035212 - 28035158
Alignment:
| Q |
128 |
agaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccat |
182 |
Q |
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| T |
28035212 |
agaagccaaaagtaggttggaactttatcaatcaagaggtaccagaggattccat |
28035158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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