View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6808_low_3 (Length: 556)

Name: NF6808_low_3
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6808_low_3
NF6808_low_3
[»] chr5 (3 HSPs)
chr5 (4-554)||(8758148-8758701)
chr5 (341-408)||(35732279-35732348)
chr5 (339-379)||(18345817-18345857)
[»] chr4 (2 HSPs)
chr4 (339-406)||(9521820-9521889)
chr4 (340-392)||(37951651-37951703)
[»] chr1 (3 HSPs)
chr1 (338-386)||(8296289-8296337)
chr1 (338-383)||(18280395-18280440)
chr1 (334-387)||(27829942-27829995)
[»] chr7 (6 HSPs)
chr7 (339-391)||(25583995-25584047)
chr7 (339-408)||(37757424-37757495)
chr7 (339-408)||(37763172-37763243)
chr7 (339-408)||(38603095-38603166)
chr7 (345-383)||(34383265-34383303)
chr7 (342-404)||(30969844-30969908)
[»] chr3 (1 HSPs)
chr3 (339-415)||(26868897-26868971)
[»] chr8 (2 HSPs)
chr8 (338-408)||(39421601-39421673)
chr8 (347-404)||(9824458-9824517)


Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 4 - 554
Target Start/End: Complemental strand, 8758701 - 8758148
Alignment:
Q  4 atctgaggaatcattcaaagtattgtttttaggatttttctatctggtccaacgcataagagttgtagataattgtatacagcaaagtctgctacacctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758701 atctgaggaatcattcaaagtattgtttttaggatttttctatctggtccaacgcataagagttgtagataattgtatacagcaaagtctgctacacctt 8758602  T
Q  104 actatatactttgacgccaacactttaaagtgttctcataagataaaaa-gttaaatggtcatttttgccaagtttttagggtaagtttaaatcttaact 202  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8758601 actatatactttgacgccaacactttacattgttctcataagataaaaaagttaaatggtcatttttgccaagtttttagggtaagtttaaatctaaact 8758502  T
Q  203 tgacatagacttatatggaacactagttgcaaagaaagggaagggttgtataacatttaggttaagaaaacaattcactagacagttgaaaatgagtctg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758501 tgacatagacttatatggaacactagttgcaaagaaagggaagggttgtataacatttaggttaagaaaacaattcactagacagttgaaaatgagtctg 8758402  T
Q  303 cacaactgaagaagtaaattgattgtatactgatttggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaacttaattaacaa 402  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8758401 cacaactgaaaaagtaaattgattgtatactgatttggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaactgaattaacaa 8758302  T
Q  403 atcaaatgtgggttttacatgtacgt--tatcgaatcacgagtttgttgaaataacaacttcaaaatttctcactttacaatttactcattttggaggag 500  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8758301 atcaaatgtgggttttacatgtacgttatattgaatcacgagtttgttgaaataacaacttcaaaatttctcactttacaatttactcattttggaggag 8758202  T
Q  501 ccaaattgattgtatacatactcagaagaatggtggaacagataagaattatga 554  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8758201 ccaaattgattgtatacatactcagaagaatggtggaatagataagaattatga 8758148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 35732279 - 35732348
Alignment:
Q  341 ctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaatcaaa 408  Q
    ||||| ||||||||||||||||| |||||||||||||||| || |||| ||  |||| ||||||||||||    
T  35732279 ctcctttaaagtgaacaactcactttagagtgtaaagtgactaatatcgaccgttaaataacaaatcaaa 35732348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 18345857 - 18345817
Alignment:
Q  339 ggctcctctaaagtgaacaactcacattagagtgtaaagtg 379  Q
    |||||||||||||||| ||| |||| |||||||||||||||    
T  18345857 ggctcctctaaagtgagcaattcactttagagtgtaaagtg 18345817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 406
Target Start/End: Original strand, 9521820 - 9521889
Alignment:
Q  339 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaatca 406  Q
    ||||||||||||||||| || |||| ||||||||||||||||||| |||||||  |||||||||||||||    
T  9521820 ggctcctctaaagtgaataattcactttagagtgtaaagtgagtaatatcaaccattaattaacaaatca 9521889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 37951703 - 37951651
Alignment:
Q  340 gctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaact 392  Q
    |||| |||||||||| |||||| | |||||| |||||||||||| ||||||||    
T  37951703 gctcatctaaagtgagcaactcgctttagagagtaaagtgagtaatatcaact 37951651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 8296337 - 8296289
Alignment:
Q  338 tggctcctctaaagtgaacaactcacattagagtgtaaagtgagtatta 386  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8296337 tggctcctctaaagtgagcaactcactttagagtgtaaagtgagtatta 8296289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 18280395 - 18280440
Alignment:
Q  338 tggctcctctaaagtgaacaactcacattagagtgtaaagtgagta 383  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||    
T  18280395 tggctcctctaaagtgagcaactcactttagagtgtaaagtgagta 18280440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 27829942 - 27829995
Alignment:
Q  334 gatttggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattat 387  Q
    |||||| ||||| |||||||||||| |||| |||||| ||| ||||||||||||    
T  27829942 gatttgactcctgtaaagtgaacaattcactttagagagtatagtgagtattat 27829995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 25583995 - 25584047
Alignment:
Q  339 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac 391  Q
    ||||| |||||||||| |||||||| ||||||||||||||||||| |||||||    
T  25583995 ggctcttctaaagtgagcaactcactttagagtgtaaagtgagtaatatcaac 25584047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 37757424 - 37757495
Alignment:
Q  339 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaa--cttaattaacaaatcaaa 408  Q
    |||||||||||| ||| |||||||| |||||||||||||||| || ||||||   |||||||| ||||||||    
T  37757424 ggctcctctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaa 37757495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 37763172 - 37763243
Alignment:
Q  339 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaa--cttaattaacaaatcaaa 408  Q
    |||||||||||| ||| |||||||| |||||||||||||||| || ||||||   |||||||| ||||||||    
T  37763172 ggctcctctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaa 37763243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 38603166 - 38603095
Alignment:
Q  339 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaatcaaa 408  Q
    ||||||| |||| ||| |||||||| |||||||||||||||| || |||||||  |||||||| ||||||||    
T  38603166 ggctcctttaaaatgagcaactcactttagagtgtaaagtgaataatatcaaccgttaattaaaaaatcaaa 38603095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 34383265 - 34383303
Alignment:
Q  345 tctaaagtgaacaactcacattagagtgtaaagtgagta 383  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  34383265 tctaaagtgaacaactcactttagagtctaaagtgagta 34383303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 30969908 - 30969844
Alignment:
Q  342 tcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaat 404  Q
    ||||||||||||| ||||| || ||||||||||||||| | | |||||||  |||||||||||||    
T  30969908 tcctctaaagtgagcaactaactttagagtgtaaagtgcgcaatatcaaccgttaattaacaaat 30969844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 26868971 - 26868897
Alignment:
Q  339 ggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaacttaattaacaaatcaaatgtgggt 415  Q
    ||||||||||||| || |||||||| ||||| |||||| ||||||||||||  || ||||| |||||||| ||||||    
T  26868971 ggctcctctaaagcgagcaactcactttagaatgtaaaatgagtattatca--ttgattaagaaatcaaaggtgggt 26868897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 39421673 - 39421601
Alignment:
Q  338 tggctcctctaaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaatcaaa 408  Q
    ||||||||||||||||| |||  ||| ||| ||| ||||||||||| |||||||  || ||||||||||||||    
T  39421673 tggctcctctaaagtgagcaatccactttaaagtataaagtgagtaatatcaaccattgattaacaaatcaaa 39421601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 9824458 - 9824517
Alignment:
Q  347 taaagtgaacaactcacattagagtgtaaagtgagtattatcaac--ttaattaacaaat 404  Q
    |||||| |||||||||| |||||||||||||| || | |||||||  |||||||||||||    
T  9824458 taaagtaaacaactcactttagagtgtaaagtaagcaatatcaactattaattaacaaat 9824517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University