View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_34 (Length: 224)
Name: NF6808_low_34
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_34 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 6333814 - 6333998
Alignment:
| Q |
1 |
cttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgaggtttggaaaaagagatatgaagaaaaaacatggaaaaagaggtat |
100 |
Q |
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| T |
6333814 |
cttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaaaaagagatatgaagaaaaaacagggaaaaagaggtat |
6333913 |
T |
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| Q |
101 |
gacacaatttggatgagaaagtggcccatttaaacgtttaatacgaatcgttttatacgatagtattcgattgaactttcattcg |
185 |
Q |
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| T |
6333914 |
gacacaatttggatgagaaagtgacccatttaaacgtttaatacgaatcgttttatacgatagtattcgattcaactttcattcg |
6333998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 6326331 - 6326511
Alignment:
| Q |
1 |
cttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgaggtttggaaaaagagatatgaagaaaaaacatggaaaaagaggtat |
100 |
Q |
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| T |
6326331 |
cttttgatgagtacaacacattcttcaatattgcttttcttatagaagagttgagttttggaata--------gaagaaaagacatggaaaaagaggctt |
6326422 |
T |
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| Q |
101 |
gacacaatttggat-----gagaaagtggcccatttaaacgtttaatacgaatcgttttatacgatagtattcgattgaactttcattcg |
185 |
Q |
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| T |
6326423 |
gacacactttggaaagatagtgaaagtgacccatt-aaacgtttaatacgaatcgttttatacgatagtattcgattgaactttcattcg |
6326511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6220966 - 6220904
Alignment:
| Q |
1 |
cttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgaggtttggaa |
63 |
Q |
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| T |
6220966 |
cttttgatgagtacaacacatgcttcaatattggtttacttatataatagttgatgtttggaa |
6220904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 6242406 - 6242322
Alignment:
| Q |
98 |
tatgacacaatttggatgagaaagtggcccatt-taaacgtttaatacgaa-tcgttttatacgatagtattcgattgaactttc |
180 |
Q |
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| T |
6242406 |
tatgaaacaatttggatgagacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattgaaatttc |
6242322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6242464 - 6242427
Alignment:
| Q |
1 |
cttttgatgagtacaacacattcttcaatattgctttt |
38 |
Q |
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| T |
6242464 |
cttttgataagtacaacacattcttcaatattgctttt |
6242427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 676 - 528
Alignment:
| Q |
5 |
tgatgagtacaacacattcttcaatattgcttttcttatataatagttgaggtttggaaaaagagatatgaagaaaaaacatggaaaaagaggtatgaca |
104 |
Q |
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| T |
676 |
tgatgagtacaacacattcttcaatattgcttttat------agagtcgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagctatgaaa |
583 |
T |
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| Q |
105 |
caatttggatgagaaagtggcccatttaaacgtttaatacgaa-tcgttttatac |
158 |
Q |
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| T |
582 |
caatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatac |
528 |
T |
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