View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6808_low_35 (Length: 222)

Name: NF6808_low_35
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6808_low_35
NF6808_low_35
[»] chr6 (3 HSPs)
chr6 (1-222)||(33817280-33817501)
chr6 (55-109)||(22015253-22015307)
chr6 (76-112)||(1021127-1021163)
[»] chr5 (4 HSPs)
chr5 (55-121)||(14004322-14004388)
chr5 (27-121)||(39156662-39156756)
chr5 (56-121)||(10982333-10982398)
chr5 (33-89)||(11615299-11615355)
[»] chr2 (5 HSPs)
chr2 (78-124)||(42986095-42986141)
chr2 (55-109)||(44325361-44325415)
chr2 (76-109)||(2377913-2377946)
chr2 (62-119)||(6735371-6735428)
chr2 (78-119)||(36886015-36886056)
[»] chr7 (2 HSPs)
chr7 (77-121)||(44048954-44048998)
chr7 (76-111)||(4624515-4624550)
[»] chr8 (1 HSPs)
chr8 (61-120)||(10491148-10491207)
[»] chr4 (4 HSPs)
chr4 (60-111)||(35656476-35656527)
chr4 (26-121)||(51125846-51125941)
chr4 (55-109)||(10997345-10997399)
chr4 (60-121)||(17123222-17123283)
[»] chr1 (3 HSPs)
chr1 (55-110)||(15867620-15867675)
chr1 (76-119)||(34951808-34951851)
chr1 (80-121)||(15920245-15920286)
[»] scaffold0029 (1 HSPs)
scaffold0029 (55-109)||(53839-53893)
[»] scaffold1396 (1 HSPs)
scaffold1396 (80-121)||(1275-1316)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33817280 - 33817501
Alignment:
Q  1 aaaattttttactgtgtcatcaaattacaaaacatcatttatatgtcttttcagatagatatgattaaagtcatgtatttttaatgatctgacgattatg 100  Q
    |||| ||||||| |||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33817280 aaaactttttaccgtgtcatccaattataaaccatcatttatatgacttttcagatagatatgattaaagtcatgtatttttaatgatctaacgattatg 33817379  T
Q  101 attgattgacagcgtaaaaaagtcaaatattttttaataccgtatgagattttcattcattctgttgttctttgtggcagcagcagttttgttgttcata 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33817380 attgattgacagcgtaaaaaaatcaaatattttttaataccgtatgagattttcattcattctgttgttctttgtggcagcagcagttttgttgttcata 33817479  T
Q  201 ctttctttgaccattccattgc 222  Q
    ||||||||||||||||||||||    
T  33817480 ctttctttgaccattccattgc 33817501  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 22015253 - 22015307
Alignment:
Q  55 atagatatgattaaagtcatgtatttttaatgatctgacgattatgattgattga 109  Q
    |||||||||||||||||| |  |||||||||||| | ||||||||||||||||||    
T  22015253 atagatatgattaaagtcttacatttttaatgatataacgattatgattgattga 22015307  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 1021127 - 1021163
Alignment:
Q  76 tatttttaatgatctgacgattatgattgattgacag 112  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  1021127 tatttttaatgatctgacaattatgattaattgacag 1021163  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 14004388 - 14004322
Alignment:
Q  55 atagatatgattaaagtcatgtatttttaatgatctgacgattatgattgattgacagcgtaaaaaa 121  Q
    |||| ||||||||||||||  |||||| |||||||| ||||||||||||||||||||| ||| ||||    
T  14004388 atagttatgattaaagtcaattattttaaatgatctcacgattatgattgattgacagtgtataaaa 14004322  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 39156662 - 39156756
Alignment:
Q  27 acaaaacatcatttatatgtcttttcagatagatatgattaaagtcatgtatttttaatgatctgacgattatgattgattgacagcgtaaaaaa 121  Q
    ||||| |||||||| |||| ||||| || ||  ||||||| ||||||  |||||||| |||||  | | ||||||||||||||||| ||||||||    
T  39156662 acaaaccatcatttgtatgacttttaaggtatgtatgattgaagtcaaatatttttattgatccaatggttatgattgattgacagagtaaaaaa 39156756  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 10982333 - 10982398
Alignment:
Q  56 tagatatgattaaagtcatgtatttttaatgatctgacgattatgattgattgacagcgtaaaaaa 121  Q
    |||||||||||||||| |  |||||||| |||||||  |||||| |||||| ||||| ||||||||    
T  10982333 tagatatgattaaagtaaaatatttttagtgatctgctgattataattgatagacagtgtaaaaaa 10982398  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 11615355 - 11615299
Alignment:
Q  33 catcatttatatgtcttttcagatagatatgattaaagtcatgtatttttaatgatc 89  Q
    ||||||||  ||| ||||| || ||||||||||||||||||  ||||||||||||||    
T  11615355 catcatttgcatgacttttgagttagatatgattaaagtcaaatatttttaatgatc 11615299  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 42986095 - 42986141
Alignment:
Q  78 tttttaatgatctgacgattatgattgattgacagcgtaaaaaagtc 124  Q
    |||||||||||||||||||||||||||| |||||| | |||||||||    
T  42986095 tttttaatgatctgacgattatgattgactgacagtggaaaaaagtc 42986141  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 44325361 - 44325415
Alignment:
Q  55 atagatatgattaaagtcatgtatttttaatgatctgacgattatgattgattga 109  Q
    |||||||||||||||||| |  |||||||||||| | ||||||||||||||||||    
T  44325361 atagatatgattaaagtcttacatttttaatgatataacgattatgattgattga 44325415  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 2377913 - 2377946
Alignment:
Q  76 tatttttaatgatctgacgattatgattgattga 109  Q
    ||||||||||||||| ||||||||||||||||||    
T  2377913 tatttttaatgatctcacgattatgattgattga 2377946  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 6735371 - 6735428
Alignment:
Q  62 tgattaaagtcatgtatttttaatgatctgacgattatgattgattgacagcgtaaaa 119  Q
    |||||||||| | | |||||||||||| ||| ||||||||||| ||||||| ||||||    
T  6735371 tgattaaagtaaggcatttttaatgatatgatgattatgattggttgacagtgtaaaa 6735428  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 36886056 - 36886015
Alignment:
Q  78 tttttaatgatctgacgattatgattgattgacagcgtaaaa 119  Q
    |||||||||| ||||||||||||||||||||| || ||||||    
T  36886056 tttttaatgacctgacgattatgattgattgatagtgtaaaa 36886015  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 44048998 - 44048954
Alignment:
Q  77 atttttaatgatctgacgattatgattgattgacagcgtaaaaaa 121  Q
    ||||||| |||||||||||| |||||||||||||| |||||||||    
T  44048998 atttttattgatctgacgataatgattgattgacaacgtaaaaaa 44048954  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 4624515 - 4624550
Alignment:
Q  76 tatttttaatgatctgacgattatgattgattgaca 111  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4624515 tatttttgatgatctgacgattatgattgattgaca 4624550  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 10491148 - 10491207
Alignment:
Q  61 atgattaaagtcatgtatttttaatgatctgacgattatgattgattgacagcgtaaaaa 120  Q
    |||||||||||||  | ||||||||||||||| | ||||||||||||| ||| |||||||    
T  10491148 atgattaaagtcaattttttttaatgatctgatggttatgattgattgccagtgtaaaaa 10491207  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 35656476 - 35656527
Alignment:
Q  60 tatgattaaagtcatgtatttttaatgatctgacgattatgattgattgaca 111  Q
    ||||||||| ||||  ||||||||||||| ||||||||||||||||| ||||    
T  35656476 tatgattaatgtcaaatatttttaatgatgtgacgattatgattgatcgaca 35656527  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 51125941 - 51125846
Alignment:
Q  26 tacaaaacatcatttatatgtcttttcagatagatatgattaaagtcatgtatttttaatgatctgacgattatgattgattgacagcgtaaaaaa 121  Q
    |||||| |||||||| ||||   ||| || || |||||||||||||||  ||||| ||||||| || ||||||||||||||||  || ||||||||    
T  51125941 tacaaaccatcatttgtatgatgttttaggtatatatgattaaagtcaaatatttctaatgatttggcgattatgattgattggtagtgtaaaaaa 51125846  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 10997345 - 10997399
Alignment:
Q  55 atagatatgattaaagtcatgtatttttaatgatctgacgattatgattgattga 109  Q
    |||||||||||||||||| |   ||||||||||| | ||||||||||||||||||    
T  10997345 atagatatgattaaagtcttacgtttttaatgatataacgattatgattgattga 10997399  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 17123222 - 17123283
Alignment:
Q  60 tatgattaaagtcatgtatttttaatgatctgacgattatgattgattgacagcgtaaaaaa 121  Q
    ||||||||||||||    |||||||||||  || ||||||||||||||| ||||||||||||    
T  17123222 tatgattaaagtcaaacttttttaatgataggatgattatgattgattggcagcgtaaaaaa 17123283  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 15867620 - 15867675
Alignment:
Q  55 atagatatgattaaagtcatgtatttttaatgatctgacgattatgattgattgac 110  Q
    |||| ||||||||||||||   | |||||||||| |||||||||||||||||||||    
T  15867620 atagttatgattaaagtcaaacagttttaatgatatgacgattatgattgattgac 15867675  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 34951808 - 34951851
Alignment:
Q  76 tatttttaatgatctgacgattatgattgattgacagcgtaaaa 119  Q
    |||||||||||||||||| | |||||||||||||||| ||||||    
T  34951808 tatttttaatgatctgaccaatatgattgattgacagtgtaaaa 34951851  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 15920245 - 15920286
Alignment:
Q  80 tttaatgatctgacgattatgattgattgacagcgtaaaaaa 121  Q
    ||||||||||| ||||||||||||||||||| | ||||||||    
T  15920245 tttaatgatctcacgattatgattgattgacggtgtaaaaaa 15920286  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 53893 - 53839
Alignment:
Q  55 atagatatgattaaagtcatgtatttttaatgatctgacgattatgattgattga 109  Q
    |||||||||||||||||| |   ||||||||||| | ||||||||||||||||||    
T  53893 atagatatgattaaagtcttacgtttttaatgatataacgattatgattgattga 53839  T

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Target: scaffold1396 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1396
Description:

Target: scaffold1396; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 1316 - 1275
Alignment:
Q  80 tttaatgatctgacgattatgattgattgacagcgtaaaaaa 121  Q
    ||||||||| |||| ||||||||||||||||| |||||||||    
T  1316 tttaatgatatgaccattatgattgattgacaacgtaaaaaa 1275  T

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