View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_36 (Length: 211)
Name: NF6808_low_36
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 38552156 - 38552340
Alignment:
| Q |
12 |
cttaccttaagccgtgttccaacaattttatgccctcacttgagtaagaagctggcgttaatagctcggcgtttattcatgcttaatctaactttataaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
38552156 |
cttaccttaagccgtgttccaacaattttatgccctcacttgagtgacaagctggcgttaatagctcggcgttgatttatgcttaatctaactttataaa |
38552255 |
T |
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| Q |
112 |
ggctcatatattttctgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
196 |
Q |
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| T |
38552256 |
ggcccatatattttatgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
38552340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 38596656 - 38596473
Alignment:
| Q |
13 |
ttaccttaagccgtgttccaacaattttatgccctcacttgagtaagaagctggcgttaatagctcggcgtttattcatgcttaatctaactttataaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
38596656 |
ttaccttaagccgtgttccaacaattttatgccctcacttgagtaacaagctggcgttaatagctcggcattgattcatgcttaatctaactttataaag |
38596557 |
T |
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| Q |
113 |
gctcatatattttctgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
196 |
Q |
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| T |
38596556 |
acccatatattttatgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
38596473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 38061207 - 38061023
Alignment:
| Q |
12 |
cttaccttaagccgtgttccaacaattttatgccctcacttgagtaagaagctggcgttaatagctcggcgtttattcatgcttaatctaactttataaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
38061207 |
cttaccttaagccgtgttccaacaattttatgccctcacttgagtaacaagctgtcgttaatagctcggcgtcgattcatgcttaatcttactttataaa |
38061108 |
T |
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| Q |
112 |
ggctcatatattttctgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
196 |
Q |
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||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38061107 |
ggcccatatattttatgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtgattatatcacactatgatg |
38061023 |
T |
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