View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6808_low_37 (Length: 204)
Name: NF6808_low_37
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 29082364 - 29082194
Alignment:
| Q |
15 |
aatataggaaaaatatatatcataagaaatcattcagtattgaaacacaaatgtttagaaggctccttcctagcacatatgcttcaaaacctgcacaatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29082364 |
aatataggaaaaatatatatcataagaaatcattcagtattgaaacacaaatgtttagaaggctccttcctagcacatatgcttcaaaacctgcacaatt |
29082265 |
T |
|
| Q |
115 |
tacattcaactcacacagacaacagtcaatcaaattcaaaccacaaaaaataacagaaattcgatgaagac |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29082264 |
tacattcaactcacacagacaacagtcaatcaaattcaaaccacaaaaaataacagaaattcgatgaagac |
29082194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 24506487 - 24506419
Alignment:
| Q |
93 |
atgcttcaaaacctgcacaatttacattcaactcacacagacaacagtcaatcaaattcaaaccacaaa |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
24506487 |
atgcttcaaaacctgcacaatttacattcaactcacacaatcaacagtcaatcaaattcaaatcacaaa |
24506419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 35456205 - 35456142
Alignment:
| Q |
97 |
ttcaaaacctgcacaatttacattcaactcacacagacaacagtcaatcaaattcaaaccacaa |
160 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||| ||||| |
|
|
| T |
35456205 |
ttcaaaacctgcacaatttacattcaattcacacaaccaactgtcaataaaattcaaatcacaa |
35456142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University