View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_5 (Length: 488)
Name: NF6808_low_5
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 48093476 - 48093023
Alignment:
| Q |
18 |
caatccaacttatacatataaatcacaaattaacaagcagatcaactttttaaaagatagaaaaaacttgcaggaatattaaaatcaatcaaagcttgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48093476 |
caatccaacttatacatataaatcacaaattaacaagcagatcaactttttaaaagatagaaaaaacttgcaggaatattaaaatcaatcaaagcttgct |
48093377 |
T |
|
| Q |
118 |
atgtgtttttggaatccaaggctaaaacagtgctgagattcattggatacatataatcagttgtgcctgacaagatctgttgaacaatcaagctgttagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48093376 |
atgtgtttttggaatccaaggctaaaacagtgctgagattcattggatacatataatcagttgtgcctgacaagatctgttgaacaatcaagctgttagc |
48093277 |
T |
|
| Q |
218 |
cttttctgaaggatgaaatgcatcccaaaatgcatattcgtcacggttagggcataaattagagagtggtgtgcatagcccaagtccattgtaaggtcct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
48093276 |
cttttctgaaggatgaaatgcatcccaaaatgcatattcgtcacggttagggcataaattagatagtggtgtgcatagcccaagtccattgtagggtcct |
48093177 |
T |
|
| Q |
318 |
tggccacaacattctatctgtgatgtaacaaatcttgcaaaaccaattc-nnnnnnnnnnnataagaaggtaatattaccataaatctaatagttatgct |
416 |
Q |
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|| ||||||||| ||||||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
48093176 |
tgaccacaacatgctatctgtgatgtaacaaatcctgcataaccaatacttttttttttatataagaaggtaatattaccataaatctaatagttatgct |
48093077 |
T |
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| Q |
417 |
accattattaaattactgtatatcatatgaatatgattagtatagttacgttac |
470 |
Q |
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| T |
48093076 |
accattattaaattactgtatatcatatgaatatgattagtatagttacgttac |
48093023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 277 - 465
Target Start/End: Original strand, 13324591 - 13324787
Alignment:
| Q |
277 |
tagagagtggtgtgcatagcccaagtccattgtaaggtccttggccacaacattctatctgtgatgtaacaaatcttgc----aaaaccaattcnnnnnn |
372 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| ||| | ||||||| | |
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| T |
13324591 |
tagagagtggtgtgca--gcccaagtccattgtagggtccttgaccacaacatgctatctgtgatgtaacaaatcctgcatatataaccaatac---ttt |
13324685 |
T |
|
| Q |
373 |
nnnnnataagaaggtaatattaccataaatctaatagttatgctaccat---------tattaaattactgtatatcatatgaatatgattagtatagtt |
463 |
Q |
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| T |
13324686 |
tttttataagaaggtaatattaccataaatttaatagttatgctaccattatattgtatattaaattactctatatcatatgaatatgattagtatagtt |
13324785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 277 - 465
Target Start/End: Original strand, 5666464 - 5666660
Alignment:
| Q |
277 |
tagagagtggtgtgcatagcccaagtccattgtaaggtccttggccacaacattctatctgtgatgtaacaaatcttgc----aaaaccaattcnnnnnn |
372 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| ||| | ||||||| | |
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| T |
5666464 |
tagagagtggtgtgca--gcccaagtccattgtagggtccttgaccacaacatgctatctgtgatgtaacaaatcctgcatatataaccaatac---ttt |
5666558 |
T |
|
| Q |
373 |
nnnnnataagaaggtaatattaccataaatctaatagttatgctaccat---------tattaaattactgtatatcatatgaatatgattagtatagtt |
463 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5666559 |
tttttataagaaggtaatattaccataaatttaatagttatgctaccattatattgtatattaaattactctatatcatatgaatatgattagtatagtt |
5666658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 143 - 351
Target Start/End: Original strand, 35376209 - 35376417
Alignment:
| Q |
143 |
aacagtgctgagattcattggatacatataatcagttgtgcctgacaagatctgttgaacaatcaagctgttagccttttctgaaggatgaaatgcatcc |
242 |
Q |
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||||||||| |||||||| || |||||||| ||| | | ||| | |||||||||||| || || | ||| |||| ||||| || ||||| |||| |||| |
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| T |
35376209 |
aacagtgcttagattcatagggtacatatactcattggagccagtcaagatctgttgcactatgattctgctagctttttcagatggatggaatggatcc |
35376308 |
T |
|
| Q |
243 |
caaaatgcatattcgtcacggttagggcataaattagagagtggtgtgcatagcccaagtccattgtaaggtccttggccacaacattctatctgtgatg |
342 |
Q |
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||||||||||| ||| || || |||| || || || || ||||||||||| |||| ||||||||||| ||||| |||||||| |||||| ||||| |
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| T |
35376309 |
caaaatgcataaaggtctcgattttggcacaagtttgaaaggggtgtgcatagtccaatcccattgtaagggccttgtccacaacaagctatctttgatg |
35376408 |
T |
|
| Q |
343 |
taacaaatc |
351 |
Q |
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||||||||| |
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| T |
35376409 |
taacaaatc |
35376417 |
T |
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