View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_6 (Length: 473)
Name: NF6808_low_6
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 469
Target Start/End: Original strand, 38119179 - 38119627
Alignment:
| Q |
20 |
ctaccttcatccatcatgggttgtggcaaaagcaaaggcttcttaggccataattaaacaagcaatttcaatttttcctttgttactttagaacatccaa |
119 |
Q |
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| T |
38119179 |
ctaccttcatccatcatgggttgtggcaaaagcaaaggcttcttaggccataattaaacaagcaatttcaatttttcctttgttactttagaacatccaa |
38119278 |
T |
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| Q |
120 |
ttcttttcttactccaaaagaatcatcatgatatattttaannnnnnnnnnnnaaattttagtattatacaaattgtgctggcctcattgtatatattgt |
219 |
Q |
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| T |
38119279 |
ttcttttcttactccaaaagaatcatcatgatatattttaattttttttta--aaattttagtattatacaaattgtgctggcctcattgtatatattgt |
38119376 |
T |
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| Q |
220 |
aaagtgtaattgtaatgattcctcagactcttttctgtgaaaaatggttagagcaactcaaaattgcataattgcagtagactactact-ctctagtctc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38119377 |
aaagtgtaattgtaatgattcctcagactcttttctgtgaaaaatggttagagcaactcaaaattgcataattgcagtagactactacttctctagtctc |
38119476 |
T |
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| Q |
319 |
ctccagttactgtcactgccaactttcacatgagttacataccaactttacaaagtcaatcccttaggtatatctttgaccaagtagctacttctatgca |
418 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38119477 |
ctccggttactgtcactgccaactttcacatgagttacataccaactttacaaagtcaatcccttaggtatatctttgaccaagtagctacttctatgca |
38119576 |
T |
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| Q |
419 |
agctatcttctgtcattttcaatacctaccatttatttaatgtatattctt |
469 |
Q |
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| T |
38119577 |
agctatcttctgtcattttcaatacctaccatttatttattgtattttctt |
38119627 |
T |
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