View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6808_low_9 (Length: 425)
Name: NF6808_low_9
Description: NF6808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6808_low_9 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 186 - 417
Target Start/End: Original strand, 6783 - 7015
Alignment:
| Q |
186 |
ttgtgattcatactgtatacaacctactaaaagaaggctttgtatgtattcttcaaaagaaaaatcatccctgcatctatgtggtgttcattgcctttaa |
285 |
Q |
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| T |
6783 |
ttgtgattcatactgtatacaacctactaaaagaaggctttgtatgtattcttcaaaagaaaaatcatccctgcatctatgtggtgttcattgcctttaa |
6882 |
T |
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| Q |
286 |
gttag-ggtggtaggccgcctaatgacatctgttactcaaccgccatcacaccaccggaactaaatgggttgcctaatattttctgacggaaagagaaga |
384 |
Q |
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| T |
6883 |
gttagcggtggtaggccgcctaatgacatctgttactcaaccgccatcacaccaccggaactaaatgggttgcctaatattttctgacggaaagagaaga |
6982 |
T |
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| Q |
385 |
acatgctatcgacatttctactcttgatgtcca |
417 |
Q |
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| T |
6983 |
acatgctatcgacatttctactcttgatttcca |
7015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 6553 - 6721
Alignment:
| Q |
18 |
caattatcttgacaaaggttaaagctatacacactgaatcaataaatcacataattacccatattagaattagaaaaggcctccattaaactcaaatgta |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6553 |
caattatcttgacaaaggttaaagccatacacactgaatcaataaatcacataattacccatattagaattagaaaaggcctccattaaactcaaatgta |
6652 |
T |
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| Q |
118 |
ttatgtttgtatcatctctgaaattgtctccaataagaatgtggtcaaacatttttaatttcagatgtt |
186 |
Q |
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| T |
6653 |
ttatgtttgtatcatctctgaaattgtctccaataagaatgtggtcaaacatttttaatttcagatgtt |
6721 |
T |
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