View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6809_high_6 (Length: 347)
Name: NF6809_high_6
Description: NF6809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6809_high_6 |
 | |
|
| [»] chr3 (11 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 5483583 - 5483929
Alignment:
| Q |
1 |
tccaatctaataatttacttcgtgttgtatctaacaaatgaaacattttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5483583 |
tccaatctaataatttacttcgtgttgtatctaacaaatgaaacattttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataaa |
5483682 |
T |
|
| Q |
101 |
tttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5483683 |
tttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaaca |
5483782 |
T |
|
| Q |
201 |
accaagaagttttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5483783 |
accaagaagttttactagattacggtgttgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtctcgatgttttagaaagcctc |
5483882 |
T |
|
| Q |
301 |
ttaacagcaatctcttggccatctagcattataccctagtaatattt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5483883 |
ttaacagcaatctcttggccatctagcattataccctagtaatattt |
5483929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 5803676 - 5803334
Alignment:
| Q |
1 |
tccaatctaataatttacttcgtgttgtatctaacaaatgaaacattttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataaa |
100 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| | | ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5803676 |
tccaatctaatagtttacttagtgttgtatctaacaaatgacatagtttaatttagcattagaactacattatggcaagagtaaacctgagagaaataaa |
5803577 |
T |
|
| Q |
101 |
tttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5803576 |
attggttggtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgttgggcatgaattcatagatcaacaacttttcatcttgttgaatagaaca |
5803477 |
T |
|
| Q |
201 |
accaagaagttttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcctc |
300 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5803476 |
gccaagaagttttactagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcggatccttgtcccgatgttttagaaagcctc |
5803377 |
T |
|
| Q |
301 |
ttaacagcaatctcttggccatctagcattataccctagtaat |
343 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
5803376 |
ttaacagcaatctcttgcccatctaccattaagccctagtaat |
5803334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 5850104 - 5849761
Alignment:
| Q |
1 |
tccaatctaataatttacttcgtgttgtatctaacaaatgaaacatt-ttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataa |
99 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||| || ||||| |
|
|
| T |
5850104 |
tccaatctagtaatttacttcgcgtagtatctaacaaatgacacattcttaagttagcatgagaactgcattatggcaagagtaagaatgacagcaataa |
5850005 |
T |
|
| Q |
100 |
atttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaac |
199 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5850004 |
attaggttagtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgttgggcatgaattcatagatcaacaacttttcatcttgttgaatagaac |
5849905 |
T |
|
| Q |
200 |
aaccaagaagttttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcct |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| ||| ||||||| |
|
|
| T |
5849904 |
aaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaactccttgtcccgatgtattacaaagcct |
5849805 |
T |
|
| Q |
300 |
cttaacagcaatctcttggccatctagcattataccctagtaat |
343 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
5849804 |
cttaacagcaatctcttggccatctaccattaagccctagtaat |
5849761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 5445254 - 5445601
Alignment:
| Q |
1 |
tccaatctaataatttacttcgtgttgtatctaacaaatgaaacatt-ttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataa |
99 |
Q |
| |
|
||||||||| |||||| ||||| || ||||||| || || ||||| |||| ||||||||||||||||||| |||||||| ||| ||||| |||||| |
|
|
| T |
5445254 |
tccaatctagtaatttgcttcgcgtagtatctagcagatttcacattcttaagttagcatgagaactacatttcggcaagagaaaaattgagataaataa |
5445353 |
T |
|
| Q |
100 |
atttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5445354 |
atttggttggtgtgaaagttcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaatagaac |
5445453 |
T |
|
| Q |
200 |
aaccaagaagttttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcct |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
5445454 |
aaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcctgatgttttagaaagcct |
5445553 |
T |
|
| Q |
300 |
cttaacagcaatctcttggccatctagcattataccctagtaatattt |
347 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||||||| |||||| |
|
|
| T |
5445554 |
cttaacagcaatctcttggccgtctaccattacgccctagtcatattt |
5445601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 5453837 - 5454162
Alignment:
| Q |
1 |
tccaatctaataatttacttcgtgttgtatctaacaaatgaaacatt-ttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataa |
99 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||| || || ||||| |||| ||||||||||||||||||| |||||||| ||| ||||| |||||| |
|
|
| T |
5453837 |
tccaatctagtaatttgcttcgtgtagtatctagcagatttcacattcttaagttagcatgagaactacatttcggcaagagaaaaattgagataaataa |
5453936 |
T |
|
| Q |
100 |
atttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5453937 |
atttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaac |
5454036 |
T |
|
| Q |
200 |
aaccaagaagttttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcct |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
5454037 |
aaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcccgatgttttagaaagcct |
5454136 |
T |
|
| Q |
300 |
cttaacagcaatctcttggccatcta |
325 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
5454137 |
cttaacagcaatctcttggccgtcta |
5454162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 48 - 347
Target Start/End: Original strand, 5524796 - 5525094
Alignment:
| Q |
48 |
ttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataaatttggttggtgtgaaagttcaaaccaaaaataaagttatccaagctt |
147 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||| | ||| | |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
5524796 |
ttaagttagcatgggaactacattatgacaagacttaactt-agagaaattaatttggttggtgagaaagttcaaaccaaaaataaagtaatccaagctt |
5524894 |
T |
|
| Q |
148 |
ctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttactagattacggtgtcgaagtgttgccatcatct |
247 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5524895 |
ctattgggcatgaattcgtagatcaacaacttttcatcttgtcgaatagaacagccgagaagttttactagattacggtgttgaagtgttgccatcatct |
5524994 |
T |
|
| Q |
248 |
ttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcctcttaacagcaatctcttggccatctagcattataccctagtaatattt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5524995 |
ttacttcatttttgaactcctcggatccttgtatcgatgttttagctagcctcttaacagcaatctcttggccatctaccattataccctagtaatattt |
5525094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 5489044 - 5489377
Alignment:
| Q |
12 |
aatttacttcgtgttgtatctaacaaatgaaacatt-ttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataaatttggttggt |
110 |
Q |
| |
|
||||| |||||| | ||||||||||||| ||||| |||| |||||||| ||||||||||||| ||||||||||| | |||||| ||||| |||||| |
|
|
| T |
5489044 |
aatttgcttcgtatagtatctaacaaatttcacattcttaagttagcatgggaactacattatgacaagagtaaac---aaagaaattaatttcgttggt |
5489140 |
T |
|
| Q |
111 |
gtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagt |
210 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
5489141 |
gagaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcttcttgtcgaatagaacaaccaagaagt |
5489240 |
T |
|
| Q |
211 |
tttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcctcttaacagcaa |
310 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5489241 |
tttacaagattacggtgttgaagcgttgccatcaagtttacttcatttttgaactcctcggttccttgtgccgatgttttagaaagcctcttaacagcaa |
5489340 |
T |
|
| Q |
311 |
tctcttggccatctagcattataccctagtaatattt |
347 |
Q |
| |
|
|||||||||| || | ||||| |||||||||||||| |
|
|
| T |
5489341 |
tctcttggccgtcaaccattacgccctagtaatattt |
5489377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 48 - 347
Target Start/End: Original strand, 5501928 - 5502226
Alignment:
| Q |
48 |
ttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataaatttggttggtgtgaaagttcaaaccaaaaataaagttatccaagctt |
147 |
Q |
| |
|
|||| |||||||| |||||| |||||| ||| | ||||| | |||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
5501928 |
ttaagttagcatgggaactatattatgacaaaactaaac-taagagaaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagctt |
5502026 |
T |
|
| Q |
148 |
ctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttactagattacggtgtcgaagtgttgccatcatct |
247 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| | |
|
|
| T |
5502027 |
ctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccaagaagtttaacaagattacggtgttgaagtgttgccatcaagt |
5502126 |
T |
|
| Q |
248 |
ttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcctcttaacagcaatctcttggccatctagcattataccctagtaatattt |
347 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||| ||||| ||||||||| |
|
|
| T |
5502127 |
ttacttcatttttgaactcctcggttccttgtgccgatgttttagaaagccttttaacagcaatctcttggccgtctaccattacaccctggtaatattt |
5502226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 48 - 324
Target Start/End: Complemental strand, 5829307 - 5829031
Alignment:
| Q |
48 |
ttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataaatttggttggtgtgaaagttcaaaccaaaaataaagttatccaagctt |
147 |
Q |
| |
|
|||| ||||||| || |||||||| |||||| || ||| ||||| | || ||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5829307 |
ttaagttagcattagtactacattttggcaatagaaaaattgagatgagtatatttggtaggtgtgaaagttcaaaccaaaaataaagtaatccaagctt |
5829208 |
T |
|
| Q |
148 |
ctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttactagattacggtgtcgaagtgttgccatcatct |
247 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| || |
|
|
| T |
5829207 |
ctgtttggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaaaaagttttacaagattacggtgttgaagtgttgccatcaact |
5829108 |
T |
|
| Q |
248 |
ttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcctcttaacagcaatctcttggccatct |
324 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||| |||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
5829107 |
ttacttcatttttgaattcctcagttccttgtcctgatgttttagatagcctcttaacagcaatctcttgtccatct |
5829031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 95 - 347
Target Start/End: Original strand, 20342676 - 20342928
Alignment:
| Q |
95 |
aataaatttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaat |
194 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
20342676 |
aataaattgggttggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaat |
20342775 |
T |
|
| Q |
195 |
agaacaaccaagaagttttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtcttgatgttttagaa |
294 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
20342776 |
agaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaa |
20342875 |
T |
|
| Q |
295 |
agcctcttaacagcaatctcttggccatctagcattataccctagtaatattt |
347 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
20342876 |
agcctcttaacggcgatctcttggccatctatcattatgccctaggaatattt |
20342928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 5855255 - 5854926
Alignment:
| Q |
1 |
tccaatctaataatttacttcgtgttgtatctaacaaatgaaacatttt-aacttagcatgagaactacattatggcaagagtaaacctgagagaaataa |
99 |
Q |
| |
|
||||||| | |||||||||||| || ||||||| ||||||| || || | || ||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
5855255 |
tccaatcgagtaatttacttcgcgtagtatctaccaaatgacactttctgaagttagcatgagaactacattatggcaagagtaaaactgagaacaataa |
5855156 |
T |
|
| Q |
100 |
atttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
5855155 |
-tttggttggtgtgaaagttcaaaccaaaaataaagttc---------------ggcatgaattggtagatcaacaacttttcatcttggtgaatagaac |
5855072 |
T |
|
| Q |
200 |
aaccaagaagttttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcct |
299 |
Q |
| |
|
|||||||||||||||| ||||| | ||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||| |||||||| ||||| |
|
|
| T |
5855071 |
aaccaagaagttttacaagatttctgtgctgaagtgttgccatcaacttcacttcatttttgaactcctcggttccttgtcctgaggttttagagagcct |
5854972 |
T |
|
| Q |
300 |
cttaacagcaatctcttggccatctagcattataccctagtaatat |
345 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
5854971 |
cttaacagcaatctctcggccatctaacattacgccctagtaatat |
5854926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 25810558 - 25810227
Alignment:
| Q |
1 |
tccaatctaataatttacttcgtgttgtatctaacaaatgaaacatt-ttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataa |
99 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||| || || ||||| |||| ||||||||||||||||||| |||||||| ||| ||||| |||||| |
|
|
| T |
25810558 |
tccaatctagtaatttgcttcgtgtagtatctagcagatttcacattcttaagttagcatgagaactacatttcggcaagagaaaaattgagataaataa |
25810459 |
T |
|
| Q |
100 |
atttggttggtgtgaaagttcaaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
25810458 |
atttggttggtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgttgggcatgaattcttagatcaacatcttttcatcttgttgaatagaac |
25810359 |
T |
|
| Q |
200 |
aaccaagaagttttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactcctcggatccttgtcttgatgttttagaaagcct |
299 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
25810358 |
aaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcctgatgttttagaaagcct |
25810259 |
T |
|
| Q |
300 |
cttaacagcaatctcttggccatctagcatta |
331 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |
|
|
| T |
25810258 |
cttaacagcaatctcttggccgtctaccatta |
25810227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 23392984 - 23392826
Alignment:
| Q |
120 |
caaaccaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttactaga |
219 |
Q |
| |
|
||||||||| || |||| || |||||| ||||||||||| |||| || ||||| ||| |||| |||| ||||| | ||||||||||| || || ||| |
|
|
| T |
23392984 |
caaaccaaagatgaagtagtctaagcttttgttgggcatgtattcatatatcaataacatttcctctttatgaatgcagcaaccaagaagcttcacaaga |
23392885 |
T |
|
| Q |
220 |
ttacggtgtcgaagtgttgccatcatctttacttcatttttgaactcctcggatccttg |
278 |
Q |
| |
|
||||||||| ||||| | || |||| | ||||||||||| |||||||| ||||||| |
|
|
| T |
23392884 |
ttacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctccaatccttg |
23392826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 23285610 - 23285739
Alignment:
| Q |
149 |
tgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttactagattacggtgtcgaagtgttgccatcatctt |
248 |
Q |
| |
|
||||||||||| |||| || ||||| ||| |||| ||| ||||| | ||||||||||| || || |||||||||||| ||||| |||| |||| | |
|
|
| T |
23285610 |
tgttgggcatgtattcatatatcaataacatttcctctctatgaatgcagcaaccaagaagcttcacaagattacggtgttgaagttttgcaatcaacac |
23285709 |
T |
|
| Q |
249 |
tacttcatttttgaactcctcggatccttg |
278 |
Q |
| |
|
||||||||||| |||||||| ||||||| |
|
|
| T |
23285710 |
aacttcatttttaaactcctccaatccttg |
23285739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 23341769 - 23341845
Alignment:
| Q |
151 |
ttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttactagattacggtg |
227 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||| ||| |||||| ||||||| ||||| || || ||||||||||| |
|
|
| T |
23341769 |
ttgggcatgtattcatagatcaacaatttttcctctctgtgaatacaacaaccgagaagcttcacaagattacggtg |
23341845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 23385365 - 23385289
Alignment:
| Q |
151 |
ttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttactagattacggtg |
227 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||| ||| |||||| ||||||| ||||| || || ||||||||||| |
|
|
| T |
23385365 |
ttgggcatgtattcatagatcaacaatttttcctctctgtgaatacaacaaccgagaagcttcacaagattacggtg |
23385289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 14520216 - 14520293
Alignment:
| Q |
123 |
accaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaaca |
200 |
Q |
| |
|
|||||| | ||||| |||||||||| |||| |||||||||||||| | | ||||||||||||| || ||||||||| |
|
|
| T |
14520216 |
accaaataaaaagtaatccaagcttttgttcggcatgaattcgtatacaagcaacttttcatctccttcaatagaaca |
14520293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 31732753 - 31732684
Alignment:
| Q |
197 |
aacaaccaagaagttttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactc |
266 |
Q |
| |
|
||||||| || || ||||||||||| |||||| ||||| |||| || | ||||||||||||| ||||||| |
|
|
| T |
31732753 |
aacaacctagcagctttactagatttcggtgttgaagttttgcaattagctttacttcatttatgaactc |
31732684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 31745654 - 31745585
Alignment:
| Q |
197 |
aacaaccaagaagttttactagattacggtgtcgaagtgttgccatcatctttacttcatttttgaactc |
266 |
Q |
| |
|
||||||| || || ||||||||||| |||||| ||||| |||| || | ||||||||||||| ||||||| |
|
|
| T |
31745654 |
aacaacctagcagctttactagatttcggtgttgaagttttgcaattagctttacttcatttatgaactc |
31745585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 2691060 - 2691137
Alignment:
| Q |
123 |
accaaaaataaagttatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaaca |
200 |
Q |
| |
|
|||||| | ||||| |||||||||| |||| |||||||||||||| | | ||||||||||||| || ||||||||| |
|
|
| T |
2691060 |
accaaataaaaagtgatccaagcttttgttcggcatgaattcgtatacaagcaacttttcatctccttcaatagaaca |
2691137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University