View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6809_high_8 (Length: 333)
Name: NF6809_high_8
Description: NF6809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6809_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 42686134 - 42685820
Alignment:
| Q |
1 |
ctcaaattttgatgacaacacataaaagcgatcaacaacgaaaacataaatttaataaagaaaaattctaacctgaataggtgagaagtgatcagcgtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42686134 |
ctcaaattttgatgacaacacataaaagcgatcaacaacgaaaacataaatttaataaagaaaaattctaacctgaataggtgagaagtgatcagcgtat |
42686035 |
T |
|
| Q |
101 |
gatttacgaaaatcattacgattttcagatccgcaaaattgttgaggttgcaaacaactcttaatcctattccaactgtagttattgttaaccttttcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42686034 |
gatttacgaaaatcattacgattttcagatccgcaaaattgttgaggttgcaaacaactcttaatcctattccaactgtagttattgttaaccttttcct |
42685935 |
T |
|
| Q |
201 |
gcatccaagcatcgcctttgtaacgatcaacaagattgaagatgttgatgtagaatagaaaaaagaatgccaagaataggataaggagatagaaccctag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42685934 |
gcatccaagcatcgcctttgtaacgatcaacaagattgaagatgttgatgtagaatagaaaaaagaatgccaagaataggataaggagatagaaccctag |
42685835 |
T |
|
| Q |
301 |
aattttgaacgatcg |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42685834 |
aattttgaacgatcg |
42685820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 42683263 - 42683186
Alignment:
| Q |
133 |
gcaaaattgttgaggttgcaaacaactcttaatcctattccaactgtagttattgttaaccttttcctgcatccaagc |
210 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| | || |||| ||| |||||||||||| |||| ||||| |||||| |
|
|
| T |
42683263 |
gcaaaaattttgaggttgcaaacaactcttaaacgcataccaattgttgttattgttaacttttttctgcaaccaagc |
42683186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 42683408 - 42683319
Alignment:
| Q |
1 |
ctcaaattttgatgacaacacataaaagcgatcaacaacgaaaacataaatttaataaaga-----aaaattctaacctgaataggtgagaagt |
89 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||| | ||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42683408 |
ctcaaattttgatgac-acccataaaagcaatcaaca---agaacataaatccaataaagaaaaataaaattctaacctgaataggtgagaagt |
42683319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University