View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6809_low_12 (Length: 248)
Name: NF6809_low_12
Description: NF6809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6809_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 13878786 - 13878913
Alignment:
| Q |
92 |
tactctgattcattcacacattaaaagcctcagccctcagctcatgaataaaaagaaaagttatctatctattacctttggtgctaattaaaactttgta |
191 |
Q |
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| T |
13878786 |
tactctgattcattcacacattaaaagcctcagccctcagctcatgaataaagtgaaaagttatctatctattacctttggtgctaattaaaactttgta |
13878885 |
T |
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| Q |
192 |
tgtcctgtcgccaccatatatttgttta |
219 |
Q |
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| T |
13878886 |
tgtcctgtcgccaccatatattggttta |
13878913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 13874571 - 13874629
Alignment:
| Q |
32 |
taaacacaattaacaacg-aaatgaggccattaatcacttgtagtggtaaggaaaaata |
89 |
Q |
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| T |
13874571 |
taaacacaattaacaacgaaaatgaggccattgatcacttgacgttgtaaggacaaata |
13874629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 12957676 - 12957643
Alignment:
| Q |
32 |
taaacacaattaacaacgaaatgaggccattaat |
65 |
Q |
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| T |
12957676 |
taaacacaattaacaaggaaatgaggccattaat |
12957643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 13884522 - 13884566
Alignment:
| Q |
32 |
taaacacaattaacaacgaaatgaggccattaatcacttgtagtg |
76 |
Q |
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| T |
13884522 |
taaacacaattaacaaggaaatgaagccattaattacttgcagtg |
13884566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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