View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6809_low_14 (Length: 242)

Name: NF6809_low_14
Description: NF6809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6809_low_14
NF6809_low_14
[»] chr3 (13 HSPs)
chr3 (21-242)||(5483210-5483431)
chr3 (20-140)||(5501404-5501524)
chr3 (147-242)||(5524498-5524592)
chr3 (21-140)||(5488602-5488721)
chr3 (158-242)||(5501644-5501728)
chr3 (160-242)||(5488799-5488881)
chr3 (181-242)||(5829511-5829572)
chr3 (180-242)||(5803828-5803890)
chr3 (182-242)||(20342361-20342421)
chr3 (181-242)||(5453624-5453685)
chr3 (181-242)||(5855407-5855468)
chr3 (181-242)||(5445041-5445102)
chr3 (181-242)||(5850256-5850317)
[»] chr6 (1 HSPs)
chr6 (181-242)||(25810710-25810771)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 5483210 - 5483431
Alignment:
Q  21 cctaaagcatagaacacattgcttggaatatttattgatattgggcatagtccatgtatagtctatattctatggactaatgctccaatatgaaaaatta 120  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  5483210 cctaaagcatagaacacattgcttggaatatttgttgatattggacatagtctatgtatagtctatattctatggactaatactccaatatgaaaaatta 5483309  T
Q  121 ttatcaaagactaaaaccaatgaaaattaagccttatattgaaataaatgtaggttagatattactatgttcccatcactctatttgtattagcctcggc 220  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5483310 ttatcaaagactaaaaccaatgaaaattaagccttatatcgaattaaatataggttagatattactatgttcccatcactctatttgtattagcctcggc 5483409  T
Q  221 ttcgtctcccataaatgatctg 242  Q
    ||||||||||||||||||||||    
T  5483410 ttcgtctcccataaatgatctg 5483431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 5501404 - 5501524
Alignment:
Q  20 acctaaagcatagaacacattgcttggaatatttattgatattgggcatagtccatgtatagtctatattctatggactaatgctccaatatgaaaaatt 119  Q
    ||||||| ||||||||||| |||||| ||||||| |||||||||| ||||||||||||||||| | || ||||||||||||| |||||||||||| ||||    
T  5501404 acctaaaacatagaacacaatgcttgtaatatttgttgatattggacatagtccatgtatagtatctactctatggactaatactccaatatgaacaatt 5501503  T
Q  120 attatcaaagactaaaaccaa 140  Q
    |||||||||| ||||||||||    
T  5501504 attatcaaagtctaaaaccaa 5501524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 5524498 - 5524592
Alignment:
Q  147 ttaagccttatattgaaataaatgtaggttagatattactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    |||||||||| ||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5524498 ttaagccttaaatt-aaatatatgtaagttagatattactatgatcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 5524592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 5488602 - 5488721
Alignment:
Q  21 cctaaagcatagaacacattgcttggaatatttattgatattgggcatagtccatgtatagtctatattctatggactaatgctccaatatgaaaaatta 120  Q
    |||||| ||||||||||| | |||| ||||||| |||||||||| ||| ||| ||||||||| |  | ||||||||||||| |||||||||||| |||||    
T  5488602 cctaaaacatagaacacaatacttgtaatatttgttgatattggacatggtctatgtatagtgtccactctatggactaatactccaatatgaacaatta 5488701  T
Q  121 ttatcaaagactaaaaccaa 140  Q
    ||||||||||||||||||||    
T  5488702 ttatcaaagactaaaaccaa 5488721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 5501644 - 5501728
Alignment:
Q  158 attgaaataaatgtaggttagatattactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    |||||||||||| || |||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  5501644 attgaaataaatataagttagatattactatgatccgatcaatctatttgtattagcctctgcttcgtctcccataaatgatctg 5501728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 5488799 - 5488881
Alignment:
Q  160 tgaaataaatgtaggttagatattactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    |||||| |||||| |||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  5488799 tgaaatcaatgtaagttagatattactatgatccgatcaatctatttgtattagcctctgcttcgtctcccataaatgatctg 5488881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 5829572 - 5829511
Alignment:
Q  181 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5829572 attactatgttcccatcactctatttgtattagcctcggcttggtctcccataaatgatctg 5829511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 5803890 - 5803828
Alignment:
Q  180 tattactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  5803890 tattactatgttcccatcactctatttgtattagcctccgcttggtctcccataaatgatctg 5803828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 20342361 - 20342421
Alignment:
Q  182 ttactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20342361 ttactaggttcccatcactctatttgtattagcctcggcttggtctcccataaatgatctg 20342421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 5453624 - 5453685
Alignment:
Q  181 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  5453624 attactaagttcccatcactctatttgtattagcctcagcttggtctcccataaatgatctg 5453685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 5855468 - 5855407
Alignment:
Q  181 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  5855468 attactatgttcccatcactctatttgtattcgcctcagcttggtctcccataaatgatctg 5855407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 5445041 - 5445102
Alignment:
Q  181 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||| || |||||||||    
T  5445041 attactatgttcccatcactctatttgtattagcctcagcttgctctccaatgaatgatctg 5445102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 5850317 - 5850256
Alignment:
Q  181 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    |||||||||||||||| ||||||||||| |||||||| |||| ||||||| |||||||||||    
T  5850317 attactatgttcccatgactctatttgtcttagcctcagcttggtctcccgtaaatgatctg 5850256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 25810771 - 25810710
Alignment:
Q  181 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctg 242  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  25810771 attactaagttcccatcactctatttgtattagcctcagcttggtctcccataaatgatctg 25810710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University