View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6809_low_16 (Length: 235)
Name: NF6809_low_16
Description: NF6809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6809_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 46543199 - 46543343
Alignment:
| Q |
78 |
ttaacccctgcacctcgtaatagcactgcatccacgactgtaagggttagcctgagcaccgggtctgcaattgtagtaagaagcaccacggcgagaacat |
177 |
Q |
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| T |
46543199 |
ttaacccctgcacctcgtaatagcactgcatccacgactgtaagggttagcctgagcaccgggtctgcaattgtagtaagaagcaccacggcgagaacat |
46543298 |
T |
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| Q |
178 |
gggacagtgttcctctgaagcgcaccatagctgatgtactttgtg |
222 |
Q |
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| T |
46543299 |
gggacagtgttcctctgaagcgcaccatagctgatgtactttgtg |
46543343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46543121 - 46543155
Alignment:
| Q |
1 |
aaaaattcacaacccaacatcattaatcataaaca |
35 |
Q |
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| T |
46543121 |
aaaaattcacaacccaacatcattaatcataaaca |
46543155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 209
Target Start/End: Complemental strand, 49671320 - 49671211
Alignment:
| Q |
100 |
gcactgcatccacgactgtaagggttagcctgagcaccgggtctgcaattgtagtaagaagcaccacggcgagaacatgggacagtgttcctctgaagcg |
199 |
Q |
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| T |
49671320 |
gcactgcatccacggcggtaaggattagcctgagcaccaggccgacaattataataagaagcaccacgtcttgagcaagggacagtgttcctcctcagcg |
49671221 |
T |
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| Q |
200 |
caccatagct |
209 |
Q |
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| T |
49671220 |
caccatagct |
49671211 |
T |
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